Cluster: Rep_457_CGC92
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_00184
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4205 | 5624088 | 5625689 | - | GH32 |
| pfam | Rep_457_c_0 | Rep_457_c_0_4206 | 5625699 | 5627102 | - | DUF4960 |
| TC | Rep_457_c_0 | Rep_457_c_0_4207 | 5627125 | 5628858 | - | 8.A.46.1.5 |
| TC | Rep_457_c_0 | Rep_457_c_0_4208 | 5628877 | 5631984 | - | 1.B.14.6.1 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4209 | 5632275 | 5634077 | + | GH32 |
| pfam | Rep_457_c_0 | Rep_457_c_0_4210 | 5634194 | 5635066 | - | Aldose_epim |
| TC | Rep_457_c_0 | Rep_457_c_0_4211 | 5635272 | 5636432 | + | 2.A.1.7.17 |
| STP | Rep_457_c_0 | Rep_457_c_0_4212 | 5636479 | 5637387 | + | PfkB |
| TC | Rep_457_c_0 | Rep_457_c_0_4213 | 5637435 | 5638865 | - | 1.C.39.13.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_4214 | 5638991 | 5640598 | - | DUF6377 |
| pfam | Rep_457_c_0 | Rep_457_c_0_4215 | 5640870 | 5643155 | + | TonB_dep_Rec_b-barrel |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4216 | 5643197 | 5645386 | + | GH36 |
Gene ID: Rep_457_c_0_4205
Type: CAZyme
Location: 5624088 - 5625689 (-)
Type: CAZyme
Location: 5624088 - 5625689 (-)
Gene ID: Rep_457_c_0_4206
Type: pfam
Location: 5625699 - 5627102 (-)
Type: pfam
Location: 5625699 - 5627102 (-)
Gene ID: Rep_457_c_0_4207
Type: TC
Location: 5627125 - 5628858 (-)
Type: TC
Location: 5627125 - 5628858 (-)
Gene ID: Rep_457_c_0_4208
Type: TC
Location: 5628877 - 5631984 (-)
Type: TC
Location: 5628877 - 5631984 (-)
Gene ID: Rep_457_c_0_4209
Type: CAZyme
Location: 5632275 - 5634077 (+)
Type: CAZyme
Location: 5632275 - 5634077 (+)
Gene ID: Rep_457_c_0_4210
Type: pfam
Location: 5634194 - 5635066 (-)
Type: pfam
Location: 5634194 - 5635066 (-)
Gene ID: Rep_457_c_0_4211
Type: TC
Location: 5635272 - 5636432 (+)
Type: TC
Location: 5635272 - 5636432 (+)
Gene ID: Rep_457_c_0_4212
Type: STP
Location: 5636479 - 5637387 (+)
Type: STP
Location: 5636479 - 5637387 (+)
Gene ID: Rep_457_c_0_4213
Type: TC
Location: 5637435 - 5638865 (-)
Type: TC
Location: 5637435 - 5638865 (-)
Gene ID: Rep_457_c_0_4214
Type: pfam
Location: 5638991 - 5640598 (-)
Type: pfam
Location: 5638991 - 5640598 (-)
Gene ID: Rep_457_c_0_4215
Type: pfam
Location: 5640870 - 5643155 (+)
Type: pfam
Location: 5640870 - 5643155 (+)
Gene ID: Rep_457_c_0_4216
Type: CAZyme
Location: 5643197 - 5645386 (+)
Type: CAZyme
Location: 5643197 - 5645386 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_4205 | vegetarian > omnivore | 1.91044 | 0.00110 |
| Rep_457_c_0_4205 | vegetarian > vegan | 1.04800 | 0.02135 |
| Rep_457_c_0_4206 | vegan > omnivore | 1.53403 | 0.01606 |
| Rep_457_c_0_4206 | vegetarian > omnivore | 2.40038 | 0.00110 |
| Rep_457_c_0_4207 | vegan > omnivore | 2.11553 | 0.01606 |
| Rep_457_c_0_4207 | vegetarian > omnivore | 2.86408 | 0.00110 |
| Rep_457_c_0_4208 | vegetarian > vegan | 1.01453 | 0.02156 |
| Rep_457_c_0_4210 | vegan > omnivore | 1.75715 | 0.01606 |
| Rep_457_c_0_4210 | vegetarian > omnivore | 1.81883 | 0.00110 |
| Rep_457_c_0_4213 | vegan > omnivore | 2.48385 | 0.01606 |
| Rep_457_c_0_4213 | vegetarian > omnivore | 2.58382 | 0.00110 |
| Rep_457_c_0_4214 | vegan > omnivore | 1.70088 | 0.01606 |
| Rep_457_c_0_4214 | vegetarian > omnivore | 1.59399 | 0.00110 |
| Rep_457_c_0_4215 | vegan > omnivore | 1.09564 | 0.01606 |