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Cluster: Rep_457_CGC90

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_457_c_0 Rep_457_c_0_3972 5341442 5342794 + 2.A.66.1.32
pfam Rep_457_c_0 Rep_457_c_0_3973 5342878 5343504 + Cytidylate_kin2
TC Rep_457_c_0 Rep_457_c_0_3974 5343589 5345250 - 2.A.81.1.2
pfam Rep_457_c_0 Rep_457_c_0_3975 5345599 5347458 + MM_CoA_mutase
STP Rep_457_c_0 Rep_457_c_0_3976 5347460 5349607 + B12-binding
CAZyme Rep_457_c_0 Rep_457_c_0_3977 5349802 5353167 + CBM32
TC Rep_457_c_0 Rep_457_c_0_3978 5353298 5355511 + 3.A.7.7.1
TC Rep_457_c_0 Rep_457_c_0_3979 5355573 5357576 + 1.B.6.1.1
Gene ID: Rep_457_c_0_3972
Type: TC
Location: 5341442 - 5342794 (+)
Gene ID: Rep_457_c_0_3973
Type: pfam
Location: 5342878 - 5343504 (+)
Gene ID: Rep_457_c_0_3974
Type: TC
Location: 5343589 - 5345250 (-)
Gene ID: Rep_457_c_0_3975
Type: pfam
Location: 5345599 - 5347458 (+)
Gene ID: Rep_457_c_0_3976
Type: STP
Location: 5347460 - 5349607 (+)
Gene ID: Rep_457_c_0_3977
Type: CAZyme
Location: 5349802 - 5353167 (+)
Gene ID: Rep_457_c_0_3978
Type: TC
Location: 5353298 - 5355511 (+)
Gene ID: Rep_457_c_0_3979
Type: TC
Location: 5355573 - 5357576 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_3973 vegan > omnivore 2.27664 0.00815
Rep_457_c_0_3973 vegetarian > omnivore 2.71473 0.00110
Rep_457_c_0_3977 vegan > omnivore 1.23455 0.01606
Rep_457_c_0_3979 vegan > omnivore 2.03085 0.01606
Rep_457_c_0_3979 vegetarian > omnivore 2.12027 0.00110

🧭 Explore Read Mapping of CGC

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