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Cluster: Rep_457_CGC88

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_457_c_0 Rep_457_c_0_3923 5273189 5275150 + CBM35
CAZyme Rep_457_c_0 Rep_457_c_0_3924 5275235 5276662 - GH28
CAZyme Rep_457_c_0 Rep_457_c_0_3925 5276942 5279320 + GH2
TC Rep_457_c_0 Rep_457_c_0_3926 5279533 5282823 + 1.B.14.6.1
pfam Rep_457_c_0 Rep_457_c_0_3927 5282839 5284890 + SusD_RagB | SusD-like_3
CAZyme Rep_457_c_0 Rep_457_c_0_3928 5285087 5286463 + GH43_24
CAZyme Rep_457_c_0 Rep_457_c_0_3929 5286478 5288823 + GH115
CAZyme Rep_457_c_0 Rep_457_c_0_3930 5289071 5290768 + CE12 | CE4
CAZyme Rep_457_c_0 Rep_457_c_0_3931 5290811 5293138 + GH115
CAZyme Rep_457_c_0 Rep_457_c_0_3932 5293240 5296560 - GH35 | GH43_24
Gene ID: Rep_457_c_0_3923
Type: CAZyme
Location: 5273189 - 5275150 (+)
Gene ID: Rep_457_c_0_3924
Type: CAZyme
Location: 5275235 - 5276662 (-)
Gene ID: Rep_457_c_0_3925
Type: CAZyme
Location: 5276942 - 5279320 (+)
Gene ID: Rep_457_c_0_3926
Type: TC
Location: 5279533 - 5282823 (+)
Gene ID: Rep_457_c_0_3927
Type: pfam
Location: 5282839 - 5284890 (+)
Gene ID: Rep_457_c_0_3928
Type: CAZyme
Location: 5285087 - 5286463 (+)
Gene ID: Rep_457_c_0_3929
Type: CAZyme
Location: 5286478 - 5288823 (+)
Gene ID: Rep_457_c_0_3930
Type: CAZyme
Location: 5289071 - 5290768 (+)
Gene ID: Rep_457_c_0_3931
Type: CAZyme
Location: 5290811 - 5293138 (+)
Gene ID: Rep_457_c_0_3932
Type: CAZyme
Location: 5293240 - 5296560 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_3923 vegan > omnivore 3.68126 0.01606
Rep_457_c_0_3923 vegetarian > omnivore 3.16948 0.00110
Rep_457_c_0_3932 vegetarian > omnivore 1.12702 0.00110
Rep_457_c_0_3932 vegetarian > vegan 1.05428 0.02193

🧭 Explore Read Mapping of CGC

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