Cluster: Rep_457_CGC87
🧬 Cluster Details
- Gene Count: 30
- CAZyme Count: 16
- Substrate:
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_00217
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3890 | 5199761 | 5201776 | - | GH154 |
| TF | Rep_457_c_0 | Rep_457_c_0_3891 | 5202140 | 5206351 | + | HTH_AraC |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_3892 | 5206694 | 5207251 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_457_c_0 | Rep_457_c_0_3893 | 5207309 | 5210443 | + | 1.B.14.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_3894 | 5210474 | 5212399 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_457_c_0 | Rep_457_c_0_3895 | 5212439 | 5215453 | + | 1.B.14.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_3896 | 5215485 | 5217155 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3897 | 5217184 | 5218080 | + | CBM32 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3898 | 5218102 | 5219568 | + | GH16_3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3899 | 5219661 | 5221547 | + | GH16_3 | GH43_24 |
| TF | Rep_457_c_0 | Rep_457_c_0_3900 | 5222319 | 5226518 | + | HTH_AraC |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3901 | 5226696 | 5232551 | + | GH128 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_3902 | 5232584 | 5232799 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_457_c_0 | Rep_457_c_0_3903 | 5232995 | 5236336 | + | 1.B.14.6.1 |
| TC | Rep_457_c_0 | Rep_457_c_0_3904 | 5236349 | 5238388 | + | 8.A.46.1.1 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3905 | 5238534 | 5239661 | + | GH43_24 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3906 | 5239795 | 5241039 | + | GH154 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3907 | 5241053 | 5242354 | + | PL42 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3908 | 5242545 | 5243669 | + | GH105 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3909 | 5243862 | 5245793 | + | GH43_19 | GH43_34 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3910 | 5245834 | 5248761 | + | GH43_19 | GH97 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3911 | 5248778 | 5251303 | + | GH51_2 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_3912 | 5251315 | 5251875 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3913 | 5251889 | 5253820 | + | GH51_2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3914 | 5253955 | 5257050 | + | GH2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3915 | 5257129 | 5258130 | + | GH43_17 |
| TF | Rep_457_c_0 | Rep_457_c_0_3916 | 5258271 | 5261015 | + | HTH_AraC |
| TC | Rep_457_c_0 | Rep_457_c_0_3917 | 5261269 | 5264235 | + | 1.B.14.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_3918 | 5264248 | 5266005 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3919 | 5266025 | 5267641 | + | GH31_3 |
Gene ID: Rep_457_c_0_3890
Type: CAZyme
Location: 5199761 - 5201776 (-)
Type: CAZyme
Location: 5199761 - 5201776 (-)
Gene ID: Rep_457_c_0_3891
Type: TF
Location: 5202140 - 5206351 (+)
Type: TF
Location: 5202140 - 5206351 (+)
Gene ID: Rep_457_c_0_3892
Type:
Location: 5206694 - 5207251 (+)
Type:
Location: 5206694 - 5207251 (+)
Gene ID: Rep_457_c_0_3893
Type: TC
Location: 5207309 - 5210443 (+)
Type: TC
Location: 5207309 - 5210443 (+)
Gene ID: Rep_457_c_0_3894
Type: pfam
Location: 5210474 - 5212399 (+)
Type: pfam
Location: 5210474 - 5212399 (+)
Gene ID: Rep_457_c_0_3895
Type: TC
Location: 5212439 - 5215453 (+)
Type: TC
Location: 5212439 - 5215453 (+)
Gene ID: Rep_457_c_0_3896
Type: pfam
Location: 5215485 - 5217155 (+)
Type: pfam
Location: 5215485 - 5217155 (+)
Gene ID: Rep_457_c_0_3897
Type: CAZyme
Location: 5217184 - 5218080 (+)
Type: CAZyme
Location: 5217184 - 5218080 (+)
Gene ID: Rep_457_c_0_3898
Type: CAZyme
Location: 5218102 - 5219568 (+)
Type: CAZyme
Location: 5218102 - 5219568 (+)
Gene ID: Rep_457_c_0_3899
Type: CAZyme
Location: 5219661 - 5221547 (+)
Type: CAZyme
Location: 5219661 - 5221547 (+)
Gene ID: Rep_457_c_0_3900
Type: TF
Location: 5222319 - 5226518 (+)
Type: TF
Location: 5222319 - 5226518 (+)
Gene ID: Rep_457_c_0_3901
Type: CAZyme
Location: 5226696 - 5232551 (+)
Type: CAZyme
Location: 5226696 - 5232551 (+)
Gene ID: Rep_457_c_0_3902
Type:
Location: 5232584 - 5232799 (+)
Type:
Location: 5232584 - 5232799 (+)
Gene ID: Rep_457_c_0_3903
Type: TC
Location: 5232995 - 5236336 (+)
Type: TC
Location: 5232995 - 5236336 (+)
Gene ID: Rep_457_c_0_3904
Type: TC
Location: 5236349 - 5238388 (+)
Type: TC
Location: 5236349 - 5238388 (+)
Gene ID: Rep_457_c_0_3905
Type: CAZyme
Location: 5238534 - 5239661 (+)
Type: CAZyme
Location: 5238534 - 5239661 (+)
Gene ID: Rep_457_c_0_3906
Type: CAZyme
Location: 5239795 - 5241039 (+)
Type: CAZyme
Location: 5239795 - 5241039 (+)
Gene ID: Rep_457_c_0_3907
Type: CAZyme
Location: 5241053 - 5242354 (+)
Type: CAZyme
Location: 5241053 - 5242354 (+)
Gene ID: Rep_457_c_0_3908
Type: CAZyme
Location: 5242545 - 5243669 (+)
Type: CAZyme
Location: 5242545 - 5243669 (+)
Gene ID: Rep_457_c_0_3909
Type: CAZyme
Location: 5243862 - 5245793 (+)
Type: CAZyme
Location: 5243862 - 5245793 (+)
Gene ID: Rep_457_c_0_3910
Type: CAZyme
Location: 5245834 - 5248761 (+)
Type: CAZyme
Location: 5245834 - 5248761 (+)
Gene ID: Rep_457_c_0_3911
Type: CAZyme
Location: 5248778 - 5251303 (+)
Type: CAZyme
Location: 5248778 - 5251303 (+)
Gene ID: Rep_457_c_0_3912
Type:
Location: 5251315 - 5251875 (+)
Type:
Location: 5251315 - 5251875 (+)
Gene ID: Rep_457_c_0_3913
Type: CAZyme
Location: 5251889 - 5253820 (+)
Type: CAZyme
Location: 5251889 - 5253820 (+)
Gene ID: Rep_457_c_0_3914
Type: CAZyme
Location: 5253955 - 5257050 (+)
Type: CAZyme
Location: 5253955 - 5257050 (+)
Gene ID: Rep_457_c_0_3915
Type: CAZyme
Location: 5257129 - 5258130 (+)
Type: CAZyme
Location: 5257129 - 5258130 (+)
Gene ID: Rep_457_c_0_3916
Type: TF
Location: 5258271 - 5261015 (+)
Type: TF
Location: 5258271 - 5261015 (+)
Gene ID: Rep_457_c_0_3917
Type: TC
Location: 5261269 - 5264235 (+)
Type: TC
Location: 5261269 - 5264235 (+)
Gene ID: Rep_457_c_0_3918
Type: pfam
Location: 5264248 - 5266005 (+)
Type: pfam
Location: 5264248 - 5266005 (+)
Gene ID: Rep_457_c_0_3919
Type: CAZyme
Location: 5266025 - 5267641 (+)
Type: CAZyme
Location: 5266025 - 5267641 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_3890 | vegetarian > omnivore | 1.64863 | 0.00110 |
| Rep_457_c_0_3890 | vegan > omnivore | 1.48351 | 0.01606 |
| Rep_457_c_0_3899 | vegetarian > omnivore | 1.32051 | 0.00110 |
| Rep_457_c_0_3899 | vegan > omnivore | 1.16722 | 0.01606 |
| Rep_457_c_0_3905 | vegan > omnivore | 1.85355 | 0.01606 |
| Rep_457_c_0_3906 | vegetarian > omnivore | 1.98594 | 0.00110 |
| Rep_457_c_0_3906 | vegan > omnivore | 1.86004 | 0.01606 |
| Rep_457_c_0_3907 | vegetarian > omnivore | 1.08162 | 0.00110 |
| Rep_457_c_0_3915 | vegetarian > omnivore | 2.88226 | 0.00110 |
| Rep_457_c_0_3915 | vegan > omnivore | 2.00463 | 0.01606 |