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Cluster: Rep_457_CGC86

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_457_c_0 Rep_457_c_0_3854 5142646 5144643 - PL12_2
CAZyme Rep_457_c_0 Rep_457_c_0_3855 5144660 5145949 - GH88
TC Rep_457_c_0 Rep_457_c_0_3856 5146037 5147719 - 8.A.46.1.3
TC Rep_457_c_0 Rep_457_c_0_3857 5147730 5150927 - 1.B.14.6.1
sulfatase Rep_457_c_0 Rep_457_c_0_3858 5151261 5152427 - S1_4
TF Rep_457_c_0 Rep_457_c_0_3859 5152431 5156465 - HTH_AraC
CAZyme Rep_457_c_0 Rep_457_c_0_3860 5156503 5158401 - PL37
sulfatase Rep_457_c_0 Rep_457_c_0_3861 5158649 5160610 + S1_8
CAZyme Rep_457_c_0 Rep_457_c_0_3862 5160711 5161880 + PL13
Gene ID: Rep_457_c_0_3854
Type: CAZyme
Location: 5142646 - 5144643 (-)
Gene ID: Rep_457_c_0_3855
Type: CAZyme
Location: 5144660 - 5145949 (-)
Gene ID: Rep_457_c_0_3856
Type: TC
Location: 5146037 - 5147719 (-)
Gene ID: Rep_457_c_0_3857
Type: TC
Location: 5147730 - 5150927 (-)
Gene ID: Rep_457_c_0_3858
Type: sulfatase
Location: 5151261 - 5152427 (-)
Gene ID: Rep_457_c_0_3859
Type: TF
Location: 5152431 - 5156465 (-)
Gene ID: Rep_457_c_0_3860
Type: CAZyme
Location: 5156503 - 5158401 (-)
Gene ID: Rep_457_c_0_3861
Type: sulfatase
Location: 5158649 - 5160610 (+)
Gene ID: Rep_457_c_0_3862
Type: CAZyme
Location: 5160711 - 5161880 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_3859 vegan > omnivore 1.17990 0.01606
Rep_457_c_0_3860 vegan > omnivore 1.27043 0.01606
Rep_457_c_0_3862 vegan > omnivore 1.17235 0.01606
Rep_457_c_0_3862 vegetarian > omnivore 1.61039 0.00110

🧭 Explore Read Mapping of CGC

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