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Cluster: Rep_457_CGC82

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_457_c_0 Rep_457_c_0_3637 4844095 4845189 + 2.A.6.2.47
TC Rep_457_c_0 Rep_457_c_0_3638 4845238 4848384 + 2.A.6.2.22
NULL(UNKNOWN) Rep_457_c_0 Rep_457_c_0_3639 4848397 4848519 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_457_c_0 Rep_457_c_0_3640 4848516 4849880 + 2.A.6.2.23
TF Rep_457_c_0 Rep_457_c_0_3641 4849960 4853952 - HTH_AraC
CAZyme Rep_457_c_0 Rep_457_c_0_3642 4854189 4856090 + GH157
NULL(UNKNOWN) Rep_457_c_0 Rep_457_c_0_3643 4856042 4856137 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_457_c_0 Rep_457_c_0_3644 4856181 4859261 + 1.B.14.6.1
pfam Rep_457_c_0 Rep_457_c_0_3645 4859282 4860958 + SusD_RagB | SusD-like_3
CAZyme Rep_457_c_0 Rep_457_c_0_3646 4861176 4863686 + GH3
CAZyme Rep_457_c_0 Rep_457_c_0_3647 4863689 4866013 + GH3
Gene ID: Rep_457_c_0_3637
Type: TC
Location: 4844095 - 4845189 (+)
Gene ID: Rep_457_c_0_3638
Type: TC
Location: 4845238 - 4848384 (+)
Gene ID: Rep_457_c_0_3639
Type:
Location: 4848397 - 4848519 (+)
Gene ID: Rep_457_c_0_3640
Type: TC
Location: 4848516 - 4849880 (+)
Gene ID: Rep_457_c_0_3641
Type: TF
Location: 4849960 - 4853952 (-)
Gene ID: Rep_457_c_0_3642
Type: CAZyme
Location: 4854189 - 4856090 (+)
Gene ID: Rep_457_c_0_3643
Type:
Location: 4856042 - 4856137 (-)
Gene ID: Rep_457_c_0_3644
Type: TC
Location: 4856181 - 4859261 (+)
Gene ID: Rep_457_c_0_3645
Type: pfam
Location: 4859282 - 4860958 (+)
Gene ID: Rep_457_c_0_3646
Type: CAZyme
Location: 4861176 - 4863686 (+)
Gene ID: Rep_457_c_0_3647
Type: CAZyme
Location: 4863689 - 4866013 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_3639 vegetarian > omnivore 2.16303 0.00110
Rep_457_c_0_3639 vegetarian > vegan 1.66368 0.00604

🧭 Explore Read Mapping of CGC

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