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Cluster: Rep_457_CGC80

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_457_c_0 Rep_457_c_0_3579 4772008 4773714 + 3.A.3.7.2
TC Rep_457_c_0 Rep_457_c_0_3580 4773745 4775796 + 3.A.3.7.2
TC Rep_457_c_0 Rep_457_c_0_3581 4775809 4776384 + 3.A.3.7.2
NULL(UNKNOWN) Rep_457_c_0 Rep_457_c_0_3582 4776513 4777262 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_457_c_0 Rep_457_c_0_3583 4777365 4778489 + KdpD
TC Rep_457_c_0 Rep_457_c_0_3584 4778511 4779950 + 2.A.21.9.1
CAZyme Rep_457_c_0 Rep_457_c_0_3585 4780019 4782013 - GH127
Gene ID: Rep_457_c_0_3579
Type: TC
Location: 4772008 - 4773714 (+)
Gene ID: Rep_457_c_0_3580
Type: TC
Location: 4773745 - 4775796 (+)
Gene ID: Rep_457_c_0_3581
Type: TC
Location: 4775809 - 4776384 (+)
Gene ID: Rep_457_c_0_3582
Type:
Location: 4776513 - 4777262 (+)
Gene ID: Rep_457_c_0_3583
Type: pfam
Location: 4777365 - 4778489 (+)
Gene ID: Rep_457_c_0_3584
Type: TC
Location: 4778511 - 4779950 (+)
Gene ID: Rep_457_c_0_3585
Type: CAZyme
Location: 4780019 - 4782013 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_3582 vegetarian > omnivore 1.47180 0.00110
Rep_457_c_0_3585 vegetarian > omnivore 1.07461 0.00110

🧭 Explore Read Mapping of CGC

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