Cluster: Rep_457_CGC77
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate: pectin
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_00298
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3494 | 4649037 | 4651568 | + | CE20 | GH105 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3495 | 4651576 | 4654404 | + | GH106 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3496 | 4654554 | 4656383 | + | PL11 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3497 | 4656421 | 4657944 | + | GH28 |
| pfam | Rep_457_c_0 | Rep_457_c_0_3498 | 4658064 | 4659521 | + | FGGY_N | FGGY_C |
| pfam | Rep_457_c_0 | Rep_457_c_0_3499 | 4659588 | 4660841 | + | RhaA |
| TC | Rep_457_c_0 | Rep_457_c_0_3500 | 4660941 | 4661972 | + | 2.A.7.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_3501 | 4662074 | 4662883 | + | Aldolase_II |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3502 | 4662908 | 4664206 | + | GH105 |
| TF | Rep_457_c_0 | Rep_457_c_0_3503 | 4664340 | 4665260 | + | HTH_AraC |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3504 | 4665495 | 4666916 | + | GH28 |
| sulfatase | Rep_457_c_0 | Rep_457_c_0_3505 | 4666978 | 4668375 | + | S1_20 |
| TC | Rep_457_c_0 | Rep_457_c_0_3506 | 4668708 | 4671914 | + | 1.B.14.6.1 |
| sulfatase | Rep_457_c_0 | Rep_457_c_0_3507 | 4671923 | 4673926 | + | S1_27 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_3508 | 4673868 | 4674059 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3509 | 4674065 | 4675441 | + | PL1_2 |
| TC | Rep_457_c_0 | Rep_457_c_0_3510 | 4675692 | 4678070 | + | 1.B.14.3.1 |
Gene ID: Rep_457_c_0_3494
Type: CAZyme
Location: 4649037 - 4651568 (+)
Type: CAZyme
Location: 4649037 - 4651568 (+)
Gene ID: Rep_457_c_0_3495
Type: CAZyme
Location: 4651576 - 4654404 (+)
Type: CAZyme
Location: 4651576 - 4654404 (+)
Gene ID: Rep_457_c_0_3496
Type: CAZyme
Location: 4654554 - 4656383 (+)
Type: CAZyme
Location: 4654554 - 4656383 (+)
Gene ID: Rep_457_c_0_3497
Type: CAZyme
Location: 4656421 - 4657944 (+)
Type: CAZyme
Location: 4656421 - 4657944 (+)
Gene ID: Rep_457_c_0_3498
Type: pfam
Location: 4658064 - 4659521 (+)
Type: pfam
Location: 4658064 - 4659521 (+)
Gene ID: Rep_457_c_0_3499
Type: pfam
Location: 4659588 - 4660841 (+)
Type: pfam
Location: 4659588 - 4660841 (+)
Gene ID: Rep_457_c_0_3500
Type: TC
Location: 4660941 - 4661972 (+)
Type: TC
Location: 4660941 - 4661972 (+)
Gene ID: Rep_457_c_0_3501
Type: pfam
Location: 4662074 - 4662883 (+)
Type: pfam
Location: 4662074 - 4662883 (+)
Gene ID: Rep_457_c_0_3502
Type: CAZyme
Location: 4662908 - 4664206 (+)
Type: CAZyme
Location: 4662908 - 4664206 (+)
Gene ID: Rep_457_c_0_3503
Type: TF
Location: 4664340 - 4665260 (+)
Type: TF
Location: 4664340 - 4665260 (+)
Gene ID: Rep_457_c_0_3504
Type: CAZyme
Location: 4665495 - 4666916 (+)
Type: CAZyme
Location: 4665495 - 4666916 (+)
Gene ID: Rep_457_c_0_3505
Type: sulfatase
Location: 4666978 - 4668375 (+)
Type: sulfatase
Location: 4666978 - 4668375 (+)
Gene ID: Rep_457_c_0_3506
Type: TC
Location: 4668708 - 4671914 (+)
Type: TC
Location: 4668708 - 4671914 (+)
Gene ID: Rep_457_c_0_3507
Type: sulfatase
Location: 4671923 - 4673926 (+)
Type: sulfatase
Location: 4671923 - 4673926 (+)
Gene ID: Rep_457_c_0_3508
Type:
Location: 4673868 - 4674059 (-)
Type:
Location: 4673868 - 4674059 (-)
Gene ID: Rep_457_c_0_3509
Type: CAZyme
Location: 4674065 - 4675441 (+)
Type: CAZyme
Location: 4674065 - 4675441 (+)
Gene ID: Rep_457_c_0_3510
Type: TC
Location: 4675692 - 4678070 (+)
Type: TC
Location: 4675692 - 4678070 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_3494 | vegetarian > omnivore | 1.09007 | 0.00110 |
| Rep_457_c_0_3498 | vegan > omnivore | 1.10725 | 0.01606 |
| Rep_457_c_0_3500 | vegetarian > omnivore | 1.68171 | 0.00110 |
| Rep_457_c_0_3502 | vegan > omnivore | 1.40468 | 0.01606 |
| Rep_457_c_0_3502 | vegetarian > omnivore | 1.87539 | 0.00110 |