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Cluster: Rep_457_CGC68

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_457_c_0 Rep_457_c_0_3146 4178859 4179659 + GT2
CAZyme Rep_457_c_0 Rep_457_c_0_3147 4179668 4180666 + GT2
CAZyme Rep_457_c_0 Rep_457_c_0_3148 4180698 4181687 + GT2
pfam Rep_457_c_0 Rep_457_c_0_3149 4181716 4182801 + Glyco_tran_WbsX
CAZyme Rep_457_c_0 Rep_457_c_0_3150 4182832 4183659 + GT2
CAZyme Rep_457_c_0 Rep_457_c_0_3151 4183656 4184642 + GT2
CAZyme Rep_457_c_0 Rep_457_c_0_3152 4184647 4185564 + GT11
pfam Rep_457_c_0 Rep_457_c_0_3153 4185624 4186382 - Glycos_transf_2
CAZyme Rep_457_c_0 Rep_457_c_0_3154 4186429 4187196 - GT6
pfam Rep_457_c_0 Rep_457_c_0_3155 4187367 4188245 + Glyco_tranf_2_5
TC Rep_457_c_0 Rep_457_c_0_3156 4188709 4190154 + 1.C.39.13.2
Gene ID: Rep_457_c_0_3146
Type: CAZyme
Location: 4178859 - 4179659 (+)
Gene ID: Rep_457_c_0_3147
Type: CAZyme
Location: 4179668 - 4180666 (+)
Gene ID: Rep_457_c_0_3148
Type: CAZyme
Location: 4180698 - 4181687 (+)
Gene ID: Rep_457_c_0_3149
Type: pfam
Location: 4181716 - 4182801 (+)
Gene ID: Rep_457_c_0_3150
Type: CAZyme
Location: 4182832 - 4183659 (+)
Gene ID: Rep_457_c_0_3151
Type: CAZyme
Location: 4183656 - 4184642 (+)
Gene ID: Rep_457_c_0_3152
Type: CAZyme
Location: 4184647 - 4185564 (+)
Gene ID: Rep_457_c_0_3153
Type: pfam
Location: 4185624 - 4186382 (-)
Gene ID: Rep_457_c_0_3154
Type: CAZyme
Location: 4186429 - 4187196 (-)
Gene ID: Rep_457_c_0_3155
Type: pfam
Location: 4187367 - 4188245 (+)
Gene ID: Rep_457_c_0_3156
Type: TC
Location: 4188709 - 4190154 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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