Cluster: Rep_457_CGC63
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_00375
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3022 | 3999649 | 4001886 | + | GH92 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3023 | 4002366 | 4005935 | - | GH2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3024 | 4005945 | 4007399 | - | GH29 |
| TC | Rep_457_c_0 | Rep_457_c_0_3025 | 4007738 | 4010836 | + | 1.B.14.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_3026 | 4010849 | 4012759 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_3027 | 4012788 | 4014101 | + | CBM32 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_3028 | 4014255 | 4016882 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_457_c_0 | Rep_457_c_0_3029 | 4016948 | 4021255 | - | HTH_AraC |
| TC | Rep_457_c_0 | Rep_457_c_0_3030 | 4021410 | 4024451 | + | 1.B.14.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_3031 | 4024475 | 4026355 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_457_c_0 | Rep_457_c_0_3032 | 4026551 | 4027417 | - | EamA | EamA |
| TC | Rep_457_c_0 | Rep_457_c_0_3033 | 4027498 | 4029504 | - | 3.A.18.1.1 |
Gene ID: Rep_457_c_0_3022
Type: CAZyme
Location: 3999649 - 4001886 (+)
Type: CAZyme
Location: 3999649 - 4001886 (+)
Gene ID: Rep_457_c_0_3023
Type: CAZyme
Location: 4002366 - 4005935 (-)
Type: CAZyme
Location: 4002366 - 4005935 (-)
Gene ID: Rep_457_c_0_3024
Type: CAZyme
Location: 4005945 - 4007399 (-)
Type: CAZyme
Location: 4005945 - 4007399 (-)
Gene ID: Rep_457_c_0_3025
Type: TC
Location: 4007738 - 4010836 (+)
Type: TC
Location: 4007738 - 4010836 (+)
Gene ID: Rep_457_c_0_3026
Type: pfam
Location: 4010849 - 4012759 (+)
Type: pfam
Location: 4010849 - 4012759 (+)
Gene ID: Rep_457_c_0_3027
Type: CAZyme
Location: 4012788 - 4014101 (+)
Type: CAZyme
Location: 4012788 - 4014101 (+)
Gene ID: Rep_457_c_0_3028
Type:
Location: 4014255 - 4016882 (-)
Type:
Location: 4014255 - 4016882 (-)
Gene ID: Rep_457_c_0_3029
Type: TF
Location: 4016948 - 4021255 (-)
Type: TF
Location: 4016948 - 4021255 (-)
Gene ID: Rep_457_c_0_3030
Type: TC
Location: 4021410 - 4024451 (+)
Type: TC
Location: 4021410 - 4024451 (+)
Gene ID: Rep_457_c_0_3031
Type: pfam
Location: 4024475 - 4026355 (+)
Type: pfam
Location: 4024475 - 4026355 (+)
Gene ID: Rep_457_c_0_3032
Type: pfam
Location: 4026551 - 4027417 (-)
Type: pfam
Location: 4026551 - 4027417 (-)
Gene ID: Rep_457_c_0_3033
Type: TC
Location: 4027498 - 4029504 (-)
Type: TC
Location: 4027498 - 4029504 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_3029 | vegan > omnivore | 1.38982 | 0.01606 |
| Rep_457_c_0_3029 | vegetarian > omnivore | 1.58038 | 0.00110 |
| Rep_457_c_0_3030 | vegetarian > omnivore | 1.35842 | 0.00110 |
| Rep_457_c_0_3031 | vegan > omnivore | 1.51898 | 0.01606 |
| Rep_457_c_0_3031 | vegetarian > omnivore | 1.53561 | 0.00110 |