Cluster: Rep_457_CGC62
🧬 Cluster Details
- Gene Count: 31
- CAZyme Count: 14
- Substrate:
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_01176
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_457_c_0 | Rep_457_c_0_2958 | 3895126 | 3898455 | + | 1.B.14.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_2959 | 3898467 | 3900287 | + | SusD_RagB | SusD-like_3 |
| sulfatase | Rep_457_c_0 | Rep_457_c_0_2960 | 3900382 | 3901932 | + | S1_67 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2961 | 3901984 | 3902946 | + | GH43_31 |
| TF | Rep_457_c_0 | Rep_457_c_0_2962 | 3903134 | 3907159 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2963 | 3907696 | 3908799 | + | GH105 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2964 | 3908851 | 3911571 | + | GH2 |
| sulfatase | Rep_457_c_0 | Rep_457_c_0_2965 | 3911581 | 3913443 | + | S1_24 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2966 | 3913460 | 3914629 | + | GH130_3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2967 | 3914694 | 3915800 | + | GH105 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2968 | 3915826 | 3918798 | + | GH115 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2969 | 3919068 | 3921614 | + | GH31_15 |
| pfam | Rep_457_c_0 | Rep_457_c_0_2970 | 3921914 | 3924667 | + | Trehalase | Glyco_hydro_63 | MGH1-like_GH |
| TC | Rep_457_c_0 | Rep_457_c_0_2971 | 3924996 | 3928118 | + | 1.B.14.6.1 |
| TC | Rep_457_c_0 | Rep_457_c_0_2972 | 3928153 | 3929973 | + | 8.A.46.1.6 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2973 | 3929982 | 3931013 | + | GH43_3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2974 | 3931028 | 3932005 | + | GH43_3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2975 | 3932028 | 3934049 | + | GH182 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_2976 | 3934076 | 3934342 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_457_c_0 | Rep_457_c_0_2977 | 3934229 | 3934639 | - | YbeY |
| TC | Rep_457_c_0 | Rep_457_c_0_2978 | 3934659 | 3935891 | - | 9.B.156.3.1 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_2979 | 3935996 | 3936085 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2980 | 3936100 | 3938058 | + | CE20 | CE20 |
| STP | Rep_457_c_0 | Rep_457_c_0_2981 | 3938330 | 3940324 | + | HATPase_c | HisKA |
| TF | Rep_457_c_0 | Rep_457_c_0_2982 | 3940616 | 3943423 | + | HTH_AraC |
| TC | Rep_457_c_0 | Rep_457_c_0_2983 | 3943609 | 3944931 | + | 2.A.1.1.3 |
| TC | Rep_457_c_0 | Rep_457_c_0_2984 | 3945044 | 3948235 | + | 1.B.14.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_2985 | 3948264 | 3950156 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2986 | 3950192 | 3952654 | + | GH3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2987 | 3952689 | 3954359 | + | GH32 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2988 | 3954387 | 3955937 | + | GH32 |
Gene ID: Rep_457_c_0_2958
Type: TC
Location: 3895126 - 3898455 (+)
Type: TC
Location: 3895126 - 3898455 (+)
Gene ID: Rep_457_c_0_2959
Type: pfam
Location: 3898467 - 3900287 (+)
Type: pfam
Location: 3898467 - 3900287 (+)
Gene ID: Rep_457_c_0_2960
Type: sulfatase
Location: 3900382 - 3901932 (+)
Type: sulfatase
Location: 3900382 - 3901932 (+)
Gene ID: Rep_457_c_0_2961
Type: CAZyme
Location: 3901984 - 3902946 (+)
Type: CAZyme
Location: 3901984 - 3902946 (+)
Gene ID: Rep_457_c_0_2962
Type: TF
Location: 3903134 - 3907159 (+)
Type: TF
Location: 3903134 - 3907159 (+)
Gene ID: Rep_457_c_0_2963
Type: CAZyme
Location: 3907696 - 3908799 (+)
Type: CAZyme
Location: 3907696 - 3908799 (+)
Gene ID: Rep_457_c_0_2964
Type: CAZyme
Location: 3908851 - 3911571 (+)
Type: CAZyme
Location: 3908851 - 3911571 (+)
Gene ID: Rep_457_c_0_2965
Type: sulfatase
Location: 3911581 - 3913443 (+)
Type: sulfatase
Location: 3911581 - 3913443 (+)
Gene ID: Rep_457_c_0_2966
Type: CAZyme
Location: 3913460 - 3914629 (+)
Type: CAZyme
Location: 3913460 - 3914629 (+)
Gene ID: Rep_457_c_0_2967
Type: CAZyme
Location: 3914694 - 3915800 (+)
Type: CAZyme
Location: 3914694 - 3915800 (+)
Gene ID: Rep_457_c_0_2968
Type: CAZyme
Location: 3915826 - 3918798 (+)
Type: CAZyme
Location: 3915826 - 3918798 (+)
Gene ID: Rep_457_c_0_2969
Type: CAZyme
Location: 3919068 - 3921614 (+)
Type: CAZyme
Location: 3919068 - 3921614 (+)
Gene ID: Rep_457_c_0_2970
Type: pfam
Location: 3921914 - 3924667 (+)
Type: pfam
Location: 3921914 - 3924667 (+)
Gene ID: Rep_457_c_0_2971
Type: TC
Location: 3924996 - 3928118 (+)
Type: TC
Location: 3924996 - 3928118 (+)
Gene ID: Rep_457_c_0_2972
Type: TC
Location: 3928153 - 3929973 (+)
Type: TC
Location: 3928153 - 3929973 (+)
Gene ID: Rep_457_c_0_2973
Type: CAZyme
Location: 3929982 - 3931013 (+)
Type: CAZyme
Location: 3929982 - 3931013 (+)
Gene ID: Rep_457_c_0_2974
Type: CAZyme
Location: 3931028 - 3932005 (+)
Type: CAZyme
Location: 3931028 - 3932005 (+)
Gene ID: Rep_457_c_0_2975
Type: CAZyme
Location: 3932028 - 3934049 (+)
Type: CAZyme
Location: 3932028 - 3934049 (+)
Gene ID: Rep_457_c_0_2976
Type:
Location: 3934076 - 3934342 (+)
Type:
Location: 3934076 - 3934342 (+)
Gene ID: Rep_457_c_0_2977
Type: pfam
Location: 3934229 - 3934639 (-)
Type: pfam
Location: 3934229 - 3934639 (-)
Gene ID: Rep_457_c_0_2978
Type: TC
Location: 3934659 - 3935891 (-)
Type: TC
Location: 3934659 - 3935891 (-)
Gene ID: Rep_457_c_0_2979
Type:
Location: 3935996 - 3936085 (+)
Type:
Location: 3935996 - 3936085 (+)
Gene ID: Rep_457_c_0_2980
Type: CAZyme
Location: 3936100 - 3938058 (+)
Type: CAZyme
Location: 3936100 - 3938058 (+)
Gene ID: Rep_457_c_0_2981
Type: STP
Location: 3938330 - 3940324 (+)
Type: STP
Location: 3938330 - 3940324 (+)
Gene ID: Rep_457_c_0_2982
Type: TF
Location: 3940616 - 3943423 (+)
Type: TF
Location: 3940616 - 3943423 (+)
Gene ID: Rep_457_c_0_2983
Type: TC
Location: 3943609 - 3944931 (+)
Type: TC
Location: 3943609 - 3944931 (+)
Gene ID: Rep_457_c_0_2984
Type: TC
Location: 3945044 - 3948235 (+)
Type: TC
Location: 3945044 - 3948235 (+)
Gene ID: Rep_457_c_0_2985
Type: pfam
Location: 3948264 - 3950156 (+)
Type: pfam
Location: 3948264 - 3950156 (+)
Gene ID: Rep_457_c_0_2986
Type: CAZyme
Location: 3950192 - 3952654 (+)
Type: CAZyme
Location: 3950192 - 3952654 (+)
Gene ID: Rep_457_c_0_2987
Type: CAZyme
Location: 3952689 - 3954359 (+)
Type: CAZyme
Location: 3952689 - 3954359 (+)
Gene ID: Rep_457_c_0_2988
Type: CAZyme
Location: 3954387 - 3955937 (+)
Type: CAZyme
Location: 3954387 - 3955937 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_2958 | vegan > omnivore | 1.76042 | 0.01606 |
| Rep_457_c_0_2959 | vegan > omnivore | 1.79795 | 0.01606 |
| Rep_457_c_0_2960 | vegan > omnivore | 1.77989 | 0.01606 |
| Rep_457_c_0_2961 | vegan > omnivore | 1.16011 | 0.01606 |
| Rep_457_c_0_2962 | vegan > omnivore | 3.08699 | 0.01606 |
| Rep_457_c_0_2962 | vegetarian > omnivore | 1.92271 | 0.00110 |
| Rep_457_c_0_2963 | vegan > omnivore | 2.48289 | 0.01606 |
| Rep_457_c_0_2963 | vegetarian > omnivore | 1.88344 | 0.00110 |
| Rep_457_c_0_2965 | vegan > omnivore | 1.53480 | 0.01606 |
| Rep_457_c_0_2966 | vegan > omnivore | 3.69685 | 0.01606 |
| Rep_457_c_0_2966 | vegetarian > omnivore | 3.25411 | 0.00110 |
| Rep_457_c_0_2967 | vegan > omnivore | 1.98749 | 0.01606 |
| Rep_457_c_0_2967 | vegetarian > omnivore | 1.68797 | 0.00110 |
| Rep_457_c_0_2968 | vegetarian > omnivore | 1.30380 | 0.00110 |
| Rep_457_c_0_2968 | vegan > omnivore | 2.06380 | 0.01606 |
| Rep_457_c_0_2969 | vegetarian > omnivore | 1.35904 | 0.00110 |
| Rep_457_c_0_2969 | vegan > omnivore | 1.52483 | 0.01606 |
| Rep_457_c_0_2970 | vegetarian > omnivore | 1.12875 | 0.00110 |
| Rep_457_c_0_2970 | vegan > omnivore | 1.65923 | 0.01606 |
| Rep_457_c_0_2971 | vegetarian > omnivore | 2.44750 | 0.00110 |
| Rep_457_c_0_2971 | vegan > omnivore | 2.96911 | 0.01606 |
| Rep_457_c_0_2972 | vegan > omnivore | 2.53681 | 0.01606 |
| Rep_457_c_0_2972 | vegetarian > omnivore | 1.59514 | 0.00110 |
| Rep_457_c_0_2973 | vegan > omnivore | 3.43355 | 0.01606 |
| Rep_457_c_0_2973 | vegetarian > omnivore | 2.77003 | 0.00110 |
| Rep_457_c_0_2979 | vegan > omnivore | 1.77662 | 0.01606 |
| Rep_457_c_0_2979 | vegetarian > omnivore | 2.45329 | 0.00110 |
| Rep_457_c_0_2980 | vegan > omnivore | 1.94376 | 0.01606 |
| Rep_457_c_0_2980 | vegetarian > omnivore | 1.55011 | 0.00110 |
| Rep_457_c_0_2981 | vegetarian > omnivore | 1.41623 | 0.00110 |
| Rep_457_c_0_2981 | vegan > omnivore | 1.30444 | 0.01606 |