Cluster: Rep_457_CGC60
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_02951
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2845 | 3726098 | 3728488 | + | GH95 |
| TC | Rep_457_c_0 | Rep_457_c_0_2846 | 3728531 | 3731494 | + | 1.B.14.6.1 |
| TC | Rep_457_c_0 | Rep_457_c_0_2847 | 3731526 | 3733226 | + | 8.A.46.1.6 |
| STP | Rep_457_c_0 | Rep_457_c_0_2848 | 3733558 | 3734994 | + | TPR_2 |
| STP | Rep_457_c_0 | Rep_457_c_0_2849 | 3735027 | 3737246 | + | TPR_2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2850 | 3737350 | 3738918 | - | GH30_4 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2851 | 3738941 | 3741376 | - | GH2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2852 | 3741386 | 3742993 | - | GH30_4 |
| TC | Rep_457_c_0 | Rep_457_c_0_2853 | 3743101 | 3744759 | - | 8.A.46.1.6 |
| TC | Rep_457_c_0 | Rep_457_c_0_2854 | 3744772 | 3747810 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_2855 | 3747830 | 3749344 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_457_c_0 | Rep_457_c_0_2856 | 3749546 | 3753583 | + | HTH_AraC |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2857 | 3753946 | 3755424 | - | GH30_2 |
| pfam | Rep_457_c_0 | Rep_457_c_0_2858 | 3755563 | 3756399 | - | BT_3987-like_N | BT_3044-like_C | DUF4973 |
| TC | Rep_457_c_0 | Rep_457_c_0_2859 | 3756422 | 3758428 | - | 8.A.46.1.3 |
| TC | Rep_457_c_0 | Rep_457_c_0_2860 | 3758449 | 3761526 | - | 1.B.14.6.1 |
Gene ID: Rep_457_c_0_2845
Type: CAZyme
Location: 3726098 - 3728488 (+)
Type: CAZyme
Location: 3726098 - 3728488 (+)
Gene ID: Rep_457_c_0_2846
Type: TC
Location: 3728531 - 3731494 (+)
Type: TC
Location: 3728531 - 3731494 (+)
Gene ID: Rep_457_c_0_2847
Type: TC
Location: 3731526 - 3733226 (+)
Type: TC
Location: 3731526 - 3733226 (+)
Gene ID: Rep_457_c_0_2848
Type: STP
Location: 3733558 - 3734994 (+)
Type: STP
Location: 3733558 - 3734994 (+)
Gene ID: Rep_457_c_0_2849
Type: STP
Location: 3735027 - 3737246 (+)
Type: STP
Location: 3735027 - 3737246 (+)
Gene ID: Rep_457_c_0_2850
Type: CAZyme
Location: 3737350 - 3738918 (-)
Type: CAZyme
Location: 3737350 - 3738918 (-)
Gene ID: Rep_457_c_0_2851
Type: CAZyme
Location: 3738941 - 3741376 (-)
Type: CAZyme
Location: 3738941 - 3741376 (-)
Gene ID: Rep_457_c_0_2852
Type: CAZyme
Location: 3741386 - 3742993 (-)
Type: CAZyme
Location: 3741386 - 3742993 (-)
Gene ID: Rep_457_c_0_2853
Type: TC
Location: 3743101 - 3744759 (-)
Type: TC
Location: 3743101 - 3744759 (-)
Gene ID: Rep_457_c_0_2854
Type: TC
Location: 3744772 - 3747810 (-)
Type: TC
Location: 3744772 - 3747810 (-)
Gene ID: Rep_457_c_0_2855
Type:
Location: 3747830 - 3749344 (-)
Type:
Location: 3747830 - 3749344 (-)
Gene ID: Rep_457_c_0_2856
Type: TF
Location: 3749546 - 3753583 (+)
Type: TF
Location: 3749546 - 3753583 (+)
Gene ID: Rep_457_c_0_2857
Type: CAZyme
Location: 3753946 - 3755424 (-)
Type: CAZyme
Location: 3753946 - 3755424 (-)
Gene ID: Rep_457_c_0_2858
Type: pfam
Location: 3755563 - 3756399 (-)
Type: pfam
Location: 3755563 - 3756399 (-)
Gene ID: Rep_457_c_0_2859
Type: TC
Location: 3756422 - 3758428 (-)
Type: TC
Location: 3756422 - 3758428 (-)
Gene ID: Rep_457_c_0_2860
Type: TC
Location: 3758449 - 3761526 (-)
Type: TC
Location: 3758449 - 3761526 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_2850 | vegan > omnivore | 1.07896 | 0.01606 |
| Rep_457_c_0_2850 | vegetarian > omnivore | 1.57952 | 0.00110 |
| Rep_457_c_0_2852 | vegan > omnivore | 1.67385 | 0.01606 |
| Rep_457_c_0_2852 | vegetarian > omnivore | 1.00006 | 0.00110 |
| Rep_457_c_0_2856 | vegan > omnivore | 1.30397 | 0.01606 |
| Rep_457_c_0_2856 | vegetarian > omnivore | 1.21582 | 0.00110 |
| Rep_457_c_0_2857 | vegan > omnivore | 2.29015 | 0.01606 |
| Rep_457_c_0_2857 | vegetarian > omnivore | 2.73513 | 0.00110 |
| Rep_457_c_0_2858 | vegan > omnivore | 2.30086 | 0.01606 |
| Rep_457_c_0_2858 | vegetarian > omnivore | 1.46533 | 0.00110 |