Cluster: Rep_457_CGC57
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 16
- Substrate:
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_02735
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_457_c_0 | Rep_457_c_0_2728 | 3553092 | 3554663 | + | 3.D.10.1.4 |
| pfam | Rep_457_c_0 | Rep_457_c_0_2729 | 3554945 | 3555523 | - | Ferritin | Rubrerythrin | RUBY_RBDX |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2730 | 3555718 | 3558402 | - | CBM6 | GH27 | GH43_29 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2731 | 3558433 | 3559503 | - | GH43_29 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2732 | 3559545 | 3561566 | - | CBM51 | GH27 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2733 | 3561616 | 3564237 | - | GH31_4 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2734 | 3564253 | 3565614 | - | CBM6 | GH43_29 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2735 | 3565633 | 3567573 | - | GH97 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2736 | 3567587 | 3569212 | - | CBM91 | GH43_10 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2737 | 3569252 | 3571696 | - | GH31_4 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2738 | 3571827 | 3574928 | - | GH2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2739 | 3574928 | 3576820 | - | GH97 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2740 | 3577166 | 3579583 | - | GH146 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2741 | 3579854 | 3581773 | + | CE1 | CE1 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2742 | 3581968 | 3584052 | + | GH43_35 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2743 | 3584071 | 3586443 | + | GH146 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2744 | 3586452 | 3588359 | - | GH97 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2745 | 3588377 | 3591541 | - | GH2 |
Gene ID: Rep_457_c_0_2728
Type: TC
Location: 3553092 - 3554663 (+)
Type: TC
Location: 3553092 - 3554663 (+)
Gene ID: Rep_457_c_0_2729
Type: pfam
Location: 3554945 - 3555523 (-)
Type: pfam
Location: 3554945 - 3555523 (-)
Gene ID: Rep_457_c_0_2730
Type: CAZyme
Location: 3555718 - 3558402 (-)
Type: CAZyme
Location: 3555718 - 3558402 (-)
Gene ID: Rep_457_c_0_2731
Type: CAZyme
Location: 3558433 - 3559503 (-)
Type: CAZyme
Location: 3558433 - 3559503 (-)
Gene ID: Rep_457_c_0_2732
Type: CAZyme
Location: 3559545 - 3561566 (-)
Type: CAZyme
Location: 3559545 - 3561566 (-)
Gene ID: Rep_457_c_0_2733
Type: CAZyme
Location: 3561616 - 3564237 (-)
Type: CAZyme
Location: 3561616 - 3564237 (-)
Gene ID: Rep_457_c_0_2734
Type: CAZyme
Location: 3564253 - 3565614 (-)
Type: CAZyme
Location: 3564253 - 3565614 (-)
Gene ID: Rep_457_c_0_2735
Type: CAZyme
Location: 3565633 - 3567573 (-)
Type: CAZyme
Location: 3565633 - 3567573 (-)
Gene ID: Rep_457_c_0_2736
Type: CAZyme
Location: 3567587 - 3569212 (-)
Type: CAZyme
Location: 3567587 - 3569212 (-)
Gene ID: Rep_457_c_0_2737
Type: CAZyme
Location: 3569252 - 3571696 (-)
Type: CAZyme
Location: 3569252 - 3571696 (-)
Gene ID: Rep_457_c_0_2738
Type: CAZyme
Location: 3571827 - 3574928 (-)
Type: CAZyme
Location: 3571827 - 3574928 (-)
Gene ID: Rep_457_c_0_2739
Type: CAZyme
Location: 3574928 - 3576820 (-)
Type: CAZyme
Location: 3574928 - 3576820 (-)
Gene ID: Rep_457_c_0_2740
Type: CAZyme
Location: 3577166 - 3579583 (-)
Type: CAZyme
Location: 3577166 - 3579583 (-)
Gene ID: Rep_457_c_0_2741
Type: CAZyme
Location: 3579854 - 3581773 (+)
Type: CAZyme
Location: 3579854 - 3581773 (+)
Gene ID: Rep_457_c_0_2742
Type: CAZyme
Location: 3581968 - 3584052 (+)
Type: CAZyme
Location: 3581968 - 3584052 (+)
Gene ID: Rep_457_c_0_2743
Type: CAZyme
Location: 3584071 - 3586443 (+)
Type: CAZyme
Location: 3584071 - 3586443 (+)
Gene ID: Rep_457_c_0_2744
Type: CAZyme
Location: 3586452 - 3588359 (-)
Type: CAZyme
Location: 3586452 - 3588359 (-)
Gene ID: Rep_457_c_0_2745
Type: CAZyme
Location: 3588377 - 3591541 (-)
Type: CAZyme
Location: 3588377 - 3591541 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_2730 | vegan > omnivore | 1.44989 | 0.01606 |
| Rep_457_c_0_2730 | vegetarian > omnivore | 1.12440 | 0.00110 |
| Rep_457_c_0_2731 | vegan > omnivore | 1.48474 | 0.01606 |
| Rep_457_c_0_2731 | vegetarian > omnivore | 1.80353 | 0.00110 |
| Rep_457_c_0_2732 | vegan > omnivore | 2.16401 | 0.01606 |
| Rep_457_c_0_2732 | vegetarian > omnivore | 2.62590 | 0.00110 |
| Rep_457_c_0_2733 | vegetarian > omnivore | 1.66205 | 0.00110 |
| Rep_457_c_0_2733 | vegan > omnivore | 1.23947 | 0.01606 |
| Rep_457_c_0_2734 | vegan > omnivore | 2.52687 | 0.01606 |
| Rep_457_c_0_2734 | vegetarian > omnivore | 2.67383 | 0.00110 |
| Rep_457_c_0_2735 | vegan > omnivore | 1.14508 | 0.01606 |
| Rep_457_c_0_2735 | vegetarian > omnivore | 1.58022 | 0.00110 |
| Rep_457_c_0_2736 | vegetarian > omnivore | 1.26502 | 0.00110 |
| Rep_457_c_0_2739 | vegan > omnivore | 1.48908 | 0.01606 |
| Rep_457_c_0_2739 | vegetarian > omnivore | 1.54554 | 0.00110 |
| Rep_457_c_0_2740 | vegan > omnivore | 1.23530 | 0.01606 |
| Rep_457_c_0_2741 | vegan > omnivore | 1.00995 | 0.01606 |
| Rep_457_c_0_2741 | vegetarian > vegan | 1.00925 | 0.02193 |
| Rep_457_c_0_2741 | vegetarian > omnivore | 2.01920 | 0.00110 |
| Rep_457_c_0_2742 | vegetarian > omnivore | 2.10673 | 0.00110 |
| Rep_457_c_0_2742 | vegan > omnivore | 1.46875 | 0.01606 |
| Rep_457_c_0_2743 | vegetarian > omnivore | 1.42053 | 0.00110 |
| Rep_457_c_0_2744 | vegetarian > omnivore | 2.07048 | 0.00110 |
| Rep_457_c_0_2744 | vegan > omnivore | 1.36692 | 0.01606 |