Cluster: Rep_457_CGC56
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate: xylan
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_00239
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2659 | 3460935 | 3462092 | + | CE1 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_2660 | 3462121 | 3462819 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2661 | 3462822 | 3464273 | + | GH43_7 | GH43_7 |
| TC | Rep_457_c_0 | Rep_457_c_0_2662 | 3464533 | 3467664 | + | 1.B.14.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_2663 | 3467688 | 3469424 | + | SusD_RagB |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2664 | 3469694 | 3472171 | + | GH9 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_2665 | 3472152 | 3472364 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2666 | 3472408 | 3473574 | + | CE1 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2667 | 3473582 | 3474736 | + | CE1 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2668 | 3474780 | 3475838 | + | GH43_17 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2669 | 3475887 | 3478493 | + | GH3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2670 | 3478764 | 3480095 | + | CBM6 | GH43_2 |
Gene ID: Rep_457_c_0_2659
Type: CAZyme
Location: 3460935 - 3462092 (+)
Type: CAZyme
Location: 3460935 - 3462092 (+)
Gene ID: Rep_457_c_0_2660
Type:
Location: 3462121 - 3462819 (+)
Type:
Location: 3462121 - 3462819 (+)
Gene ID: Rep_457_c_0_2661
Type: CAZyme
Location: 3462822 - 3464273 (+)
Type: CAZyme
Location: 3462822 - 3464273 (+)
Gene ID: Rep_457_c_0_2662
Type: TC
Location: 3464533 - 3467664 (+)
Type: TC
Location: 3464533 - 3467664 (+)
Gene ID: Rep_457_c_0_2663
Type: pfam
Location: 3467688 - 3469424 (+)
Type: pfam
Location: 3467688 - 3469424 (+)
Gene ID: Rep_457_c_0_2664
Type: CAZyme
Location: 3469694 - 3472171 (+)
Type: CAZyme
Location: 3469694 - 3472171 (+)
Gene ID: Rep_457_c_0_2665
Type:
Location: 3472152 - 3472364 (-)
Type:
Location: 3472152 - 3472364 (-)
Gene ID: Rep_457_c_0_2666
Type: CAZyme
Location: 3472408 - 3473574 (+)
Type: CAZyme
Location: 3472408 - 3473574 (+)
Gene ID: Rep_457_c_0_2667
Type: CAZyme
Location: 3473582 - 3474736 (+)
Type: CAZyme
Location: 3473582 - 3474736 (+)
Gene ID: Rep_457_c_0_2668
Type: CAZyme
Location: 3474780 - 3475838 (+)
Type: CAZyme
Location: 3474780 - 3475838 (+)
Gene ID: Rep_457_c_0_2669
Type: CAZyme
Location: 3475887 - 3478493 (+)
Type: CAZyme
Location: 3475887 - 3478493 (+)
Gene ID: Rep_457_c_0_2670
Type: CAZyme
Location: 3478764 - 3480095 (+)
Type: CAZyme
Location: 3478764 - 3480095 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_2659 | vegetarian > omnivore | 1.23500 | 0.00110 |
| Rep_457_c_0_2660 | vegetarian > vegan | 1.07853 | 0.02135 |
| Rep_457_c_0_2660 | vegan > omnivore | 1.35981 | 0.01606 |
| Rep_457_c_0_2660 | vegetarian > omnivore | 2.43834 | 0.00110 |
| Rep_457_c_0_2661 | vegetarian > omnivore | 1.22797 | 0.00110 |
| Rep_457_c_0_2662 | vegetarian > omnivore | 2.37184 | 0.00110 |
| Rep_457_c_0_2662 | vegetarian > vegan | 1.38121 | 0.00822 |
| Rep_457_c_0_2663 | vegetarian > omnivore | 2.44318 | 0.00110 |
| Rep_457_c_0_2663 | vegan > omnivore | 1.89146 | 0.01606 |
| Rep_457_c_0_2664 | vegetarian > omnivore | 2.46382 | 0.00110 |
| Rep_457_c_0_2664 | vegan > omnivore | 2.02869 | 0.01606 |
| Rep_457_c_0_2665 | vegetarian > omnivore | 3.15906 | 0.00110 |
| Rep_457_c_0_2665 | vegan > omnivore | 2.37111 | 0.01606 |
| Rep_457_c_0_2666 | vegan > omnivore | 2.35868 | 0.01606 |
| Rep_457_c_0_2666 | vegetarian > omnivore | 2.97728 | 0.00110 |
| Rep_457_c_0_2667 | vegetarian > omnivore | 2.16329 | 0.00110 |
| Rep_457_c_0_2667 | vegan > omnivore | 1.73767 | 0.01606 |
| Rep_457_c_0_2668 | vegetarian > vegan | 1.00584 | 0.02193 |
| Rep_457_c_0_2668 | vegetarian > omnivore | 2.24180 | 0.00110 |
| Rep_457_c_0_2668 | vegan > omnivore | 1.23596 | 0.01606 |
| Rep_457_c_0_2669 | vegetarian > vegan | 1.08521 | 0.02135 |
| Rep_457_c_0_2669 | vegetarian > omnivore | 2.07006 | 0.00110 |
| Rep_457_c_0_2670 | vegetarian > vegan | 1.11810 | 0.00560 |
| Rep_457_c_0_2670 | vegetarian > omnivore | 1.37166 | 0.00110 |