Cluster: Rep_457_CGC53
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate: arabinogalactan
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_00928
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_457_c_0 | Rep_457_c_0_2602 | 3374067 | 3375425 | + | 2.A.1.4.6 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_2603 | 3375546 | 3375716 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2604 | 3375778 | 3379425 | - | CBM67 | GH78 |
| TC | Rep_457_c_0 | Rep_457_c_0_2605 | 3379444 | 3381387 | - | 8.A.46.1.6 |
| TC | Rep_457_c_0 | Rep_457_c_0_2606 | 3381401 | 3384841 | - | 1.B.14.6.1 |
| STP | Rep_457_c_0 | Rep_457_c_0_2607 | 3384992 | 3385939 | - | FecR |
| STP | Rep_457_c_0 | Rep_457_c_0_2608 | 3386014 | 3386574 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2609 | 3387176 | 3389689 | - | GH51_2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2610 | 3389859 | 3391427 | - | GH30_4 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2611 | 3391539 | 3392882 | - | CBM32 |
| pfam | Rep_457_c_0 | Rep_457_c_0_2612 | 3392906 | 3394921 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_457_c_0 | Rep_457_c_0_2613 | 3394948 | 3398115 | - | 1.B.14.6.1 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2614 | 3398327 | 3400726 | - | GH2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2615 | 3400908 | 3402335 | - | CBM13 |
Gene ID: Rep_457_c_0_2602
Type: TC
Location: 3374067 - 3375425 (+)
Type: TC
Location: 3374067 - 3375425 (+)
Gene ID: Rep_457_c_0_2603
Type:
Location: 3375546 - 3375716 (+)
Type:
Location: 3375546 - 3375716 (+)
Gene ID: Rep_457_c_0_2604
Type: CAZyme
Location: 3375778 - 3379425 (-)
Type: CAZyme
Location: 3375778 - 3379425 (-)
Gene ID: Rep_457_c_0_2605
Type: TC
Location: 3379444 - 3381387 (-)
Type: TC
Location: 3379444 - 3381387 (-)
Gene ID: Rep_457_c_0_2606
Type: TC
Location: 3381401 - 3384841 (-)
Type: TC
Location: 3381401 - 3384841 (-)
Gene ID: Rep_457_c_0_2607
Type: STP
Location: 3384992 - 3385939 (-)
Type: STP
Location: 3384992 - 3385939 (-)
Gene ID: Rep_457_c_0_2608
Type: STP
Location: 3386014 - 3386574 (-)
Type: STP
Location: 3386014 - 3386574 (-)
Gene ID: Rep_457_c_0_2609
Type: CAZyme
Location: 3387176 - 3389689 (-)
Type: CAZyme
Location: 3387176 - 3389689 (-)
Gene ID: Rep_457_c_0_2610
Type: CAZyme
Location: 3389859 - 3391427 (-)
Type: CAZyme
Location: 3389859 - 3391427 (-)
Gene ID: Rep_457_c_0_2611
Type: CAZyme
Location: 3391539 - 3392882 (-)
Type: CAZyme
Location: 3391539 - 3392882 (-)
Gene ID: Rep_457_c_0_2612
Type: pfam
Location: 3392906 - 3394921 (-)
Type: pfam
Location: 3392906 - 3394921 (-)
Gene ID: Rep_457_c_0_2613
Type: TC
Location: 3394948 - 3398115 (-)
Type: TC
Location: 3394948 - 3398115 (-)
Gene ID: Rep_457_c_0_2614
Type: CAZyme
Location: 3398327 - 3400726 (-)
Type: CAZyme
Location: 3398327 - 3400726 (-)
Gene ID: Rep_457_c_0_2615
Type: CAZyme
Location: 3400908 - 3402335 (-)
Type: CAZyme
Location: 3400908 - 3402335 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_2602 | vegetarian > omnivore | 1.12673 | 0.00110 |
| Rep_457_c_0_2604 | vegetarian > omnivore | 1.61034 | 0.00110 |
| Rep_457_c_0_2605 | vegetarian > omnivore | 2.29215 | 0.00110 |
| Rep_457_c_0_2605 | vegetarian > vegan | 1.87294 | 0.00615 |
| Rep_457_c_0_2606 | vegan > omnivore | 1.53133 | 0.01606 |
| Rep_457_c_0_2606 | vegetarian > omnivore | 1.64699 | 0.00110 |
| Rep_457_c_0_2607 | vegetarian > omnivore | 1.63695 | 0.00110 |
| Rep_457_c_0_2607 | vegan > omnivore | 1.73111 | 0.01606 |
| Rep_457_c_0_2608 | vegetarian > omnivore | 1.97709 | 0.00110 |
| Rep_457_c_0_2608 | vegan > omnivore | 1.10841 | 0.01606 |
| Rep_457_c_0_2609 | vegan > omnivore | 1.00913 | 0.01606 |
| Rep_457_c_0_2609 | vegetarian > omnivore | 1.12384 | 0.00110 |
| Rep_457_c_0_2611 | vegan > omnivore | 1.33032 | 0.01606 |
| Rep_457_c_0_2611 | vegetarian > omnivore | 1.95839 | 0.00110 |
| Rep_457_c_0_2613 | vegan > omnivore | 1.33309 | 0.01606 |
| Rep_457_c_0_2615 | vegan > omnivore | 1.50992 | 0.01606 |
| Rep_457_c_0_2615 | vegetarian > omnivore | 1.13652 | 0.00110 |