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Cluster: Rep_457_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_457_c_0 Rep_457_c_0_2578 3332692 3334671 + 3.D.10.1.5
pfam Rep_457_c_0 Rep_457_c_0_2579 3334710 3335072 + 23S_rRNA_IVP
TC Rep_457_c_0 Rep_457_c_0_2580 3335113 3335868 + 3.D.10.1.5
CAZyme Rep_457_c_0 Rep_457_c_0_2581 3335962 3338211 - GH3
CAZyme Rep_457_c_0 Rep_457_c_0_2582 3338307 3339716 - GH50
pfam Rep_457_c_0 Rep_457_c_0_2583 3339723 3341270 - SusD_RagB | SusD-like_3
TC Rep_457_c_0 Rep_457_c_0_2584 3341329 3344349 - 1.B.14.6.1
CAZyme Rep_457_c_0 Rep_457_c_0_2585 3344502 3346919 - GH3
CAZyme Rep_457_c_0 Rep_457_c_0_2586 3347009 3349315 - GH3
Gene ID: Rep_457_c_0_2578
Type: TC
Location: 3332692 - 3334671 (+)
Gene ID: Rep_457_c_0_2579
Type: pfam
Location: 3334710 - 3335072 (+)
Gene ID: Rep_457_c_0_2580
Type: TC
Location: 3335113 - 3335868 (+)
Gene ID: Rep_457_c_0_2581
Type: CAZyme
Location: 3335962 - 3338211 (-)
Gene ID: Rep_457_c_0_2582
Type: CAZyme
Location: 3338307 - 3339716 (-)
Gene ID: Rep_457_c_0_2583
Type: pfam
Location: 3339723 - 3341270 (-)
Gene ID: Rep_457_c_0_2584
Type: TC
Location: 3341329 - 3344349 (-)
Gene ID: Rep_457_c_0_2585
Type: CAZyme
Location: 3344502 - 3346919 (-)
Gene ID: Rep_457_c_0_2586
Type: CAZyme
Location: 3347009 - 3349315 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_2579 vegan > omnivore 2.09828 0.01606
Rep_457_c_0_2579 vegetarian > omnivore 1.58840 0.00110
Rep_457_c_0_2583 vegan > omnivore 4.49776 0.01606
Rep_457_c_0_2583 vegetarian > omnivore 3.75149 0.00110
Rep_457_c_0_2586 vegan > omnivore 5.54801 0.01479
Rep_457_c_0_2586 vegetarian > omnivore 4.58026 0.00110

🧭 Explore Read Mapping of CGC

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