Cluster: Rep_457_CGC50
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: pectin
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_01238
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2548 | 3288938 | 3291529 | + | GH3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2549 | 3291569 | 3292828 | + | GH8 |
| sulfatase | Rep_457_c_0 | Rep_457_c_0_2550 | 3293100 | 3294230 | + | S1_22 |
| TF | Rep_457_c_0 | Rep_457_c_0_2551 | 3294417 | 3295274 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2552 | 3295494 | 3297134 | + | GH29 |
| TC | Rep_457_c_0 | Rep_457_c_0_2553 | 3297226 | 3300303 | + | 1.B.14.6.1 |
| TC | Rep_457_c_0 | Rep_457_c_0_2554 | 3300328 | 3302016 | + | 8.A.46.1.5 |
| pfam | Rep_457_c_0 | Rep_457_c_0_2555 | 3302122 | 3302505 | + | rhaM |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2556 | 3302656 | 3304044 | + | GH43_34 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2557 | 3304063 | 3305640 | + | CBM91 | GH43_10 |
| TC | Rep_457_c_0 | Rep_457_c_0_2558 | 3306023 | 3309232 | + | 1.B.14.6.1 |
Gene ID: Rep_457_c_0_2548
Type: CAZyme
Location: 3288938 - 3291529 (+)
Type: CAZyme
Location: 3288938 - 3291529 (+)
Gene ID: Rep_457_c_0_2549
Type: CAZyme
Location: 3291569 - 3292828 (+)
Type: CAZyme
Location: 3291569 - 3292828 (+)
Gene ID: Rep_457_c_0_2550
Type: sulfatase
Location: 3293100 - 3294230 (+)
Type: sulfatase
Location: 3293100 - 3294230 (+)
Gene ID: Rep_457_c_0_2551
Type: TF
Location: 3294417 - 3295274 (-)
Type: TF
Location: 3294417 - 3295274 (-)
Gene ID: Rep_457_c_0_2552
Type: CAZyme
Location: 3295494 - 3297134 (+)
Type: CAZyme
Location: 3295494 - 3297134 (+)
Gene ID: Rep_457_c_0_2553
Type: TC
Location: 3297226 - 3300303 (+)
Type: TC
Location: 3297226 - 3300303 (+)
Gene ID: Rep_457_c_0_2554
Type: TC
Location: 3300328 - 3302016 (+)
Type: TC
Location: 3300328 - 3302016 (+)
Gene ID: Rep_457_c_0_2555
Type: pfam
Location: 3302122 - 3302505 (+)
Type: pfam
Location: 3302122 - 3302505 (+)
Gene ID: Rep_457_c_0_2556
Type: CAZyme
Location: 3302656 - 3304044 (+)
Type: CAZyme
Location: 3302656 - 3304044 (+)
Gene ID: Rep_457_c_0_2557
Type: CAZyme
Location: 3304063 - 3305640 (+)
Type: CAZyme
Location: 3304063 - 3305640 (+)
Gene ID: Rep_457_c_0_2558
Type: TC
Location: 3306023 - 3309232 (+)
Type: TC
Location: 3306023 - 3309232 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_2549 | vegan > omnivore | 1.28755 | 0.01606 |
| Rep_457_c_0_2549 | vegetarian > omnivore | 2.34038 | 0.00110 |
| Rep_457_c_0_2549 | vegetarian > vegan | 1.05283 | 0.02193 |
| Rep_457_c_0_2557 | vegetarian > omnivore | 1.36080 | 0.00110 |