Cluster: Rep_457_CGC45
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_02785
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_457_c_0 | Rep_457_c_0_2372 | 3049051 | 3050055 | - | 9.B.33.1.2 |
| TF | Rep_457_c_0 | Rep_457_c_0_2373 | 3050069 | 3050827 | - | LytTR |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2374 | 3050944 | 3055710 | - | CBM67 | GH78 | PL8_3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2375 | 3055715 | 3057178 | - | GH28 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2376 | 3057192 | 3058382 | - | GH88 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2377 | 3058405 | 3061002 | - | GH2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2378 | 3060999 | 3063698 | - | GH2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2379 | 3063710 | 3065785 | - | PL8_3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2380 | 3065788 | 3067194 | - | GH79 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2381 | 3067210 | 3069843 | - | PL8_3 |
| TC | Rep_457_c_0 | Rep_457_c_0_2382 | 3069950 | 3071674 | - | 8.A.46.1.6 |
| TC | Rep_457_c_0 | Rep_457_c_0_2383 | 3071695 | 3074769 | - | 1.B.14.6.1 |
| TF | Rep_457_c_0 | Rep_457_c_0_2384 | 3075303 | 3079352 | + | HTH_AraC |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2385 | 3079438 | 3082941 | - | GH106 |
| TC | Rep_457_c_0 | Rep_457_c_0_2386 | 3083203 | 3084435 | - | 3.A.1.125.1 |
Gene ID: Rep_457_c_0_2372
Type: TC
Location: 3049051 - 3050055 (-)
Type: TC
Location: 3049051 - 3050055 (-)
Gene ID: Rep_457_c_0_2373
Type: TF
Location: 3050069 - 3050827 (-)
Type: TF
Location: 3050069 - 3050827 (-)
Gene ID: Rep_457_c_0_2374
Type: CAZyme
Location: 3050944 - 3055710 (-)
Type: CAZyme
Location: 3050944 - 3055710 (-)
Gene ID: Rep_457_c_0_2375
Type: CAZyme
Location: 3055715 - 3057178 (-)
Type: CAZyme
Location: 3055715 - 3057178 (-)
Gene ID: Rep_457_c_0_2376
Type: CAZyme
Location: 3057192 - 3058382 (-)
Type: CAZyme
Location: 3057192 - 3058382 (-)
Gene ID: Rep_457_c_0_2377
Type: CAZyme
Location: 3058405 - 3061002 (-)
Type: CAZyme
Location: 3058405 - 3061002 (-)
Gene ID: Rep_457_c_0_2378
Type: CAZyme
Location: 3060999 - 3063698 (-)
Type: CAZyme
Location: 3060999 - 3063698 (-)
Gene ID: Rep_457_c_0_2379
Type: CAZyme
Location: 3063710 - 3065785 (-)
Type: CAZyme
Location: 3063710 - 3065785 (-)
Gene ID: Rep_457_c_0_2380
Type: CAZyme
Location: 3065788 - 3067194 (-)
Type: CAZyme
Location: 3065788 - 3067194 (-)
Gene ID: Rep_457_c_0_2381
Type: CAZyme
Location: 3067210 - 3069843 (-)
Type: CAZyme
Location: 3067210 - 3069843 (-)
Gene ID: Rep_457_c_0_2382
Type: TC
Location: 3069950 - 3071674 (-)
Type: TC
Location: 3069950 - 3071674 (-)
Gene ID: Rep_457_c_0_2383
Type: TC
Location: 3071695 - 3074769 (-)
Type: TC
Location: 3071695 - 3074769 (-)
Gene ID: Rep_457_c_0_2384
Type: TF
Location: 3075303 - 3079352 (+)
Type: TF
Location: 3075303 - 3079352 (+)
Gene ID: Rep_457_c_0_2385
Type: CAZyme
Location: 3079438 - 3082941 (-)
Type: CAZyme
Location: 3079438 - 3082941 (-)
Gene ID: Rep_457_c_0_2386
Type: TC
Location: 3083203 - 3084435 (-)
Type: TC
Location: 3083203 - 3084435 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_2372 | vegan > omnivore | 2.04154 | 0.01606 |
| Rep_457_c_0_2372 | vegetarian > omnivore | 1.59503 | 0.00110 |
| Rep_457_c_0_2374 | vegan > omnivore | 1.88599 | 0.01606 |
| Rep_457_c_0_2374 | vegetarian > omnivore | 1.72193 | 0.00110 |
| Rep_457_c_0_2375 | vegan > omnivore | 2.27433 | 0.01606 |
| Rep_457_c_0_2375 | vegetarian > omnivore | 1.85761 | 0.00110 |
| Rep_457_c_0_2376 | vegan > omnivore | 2.41679 | 0.01606 |
| Rep_457_c_0_2376 | vegetarian > omnivore | 1.70346 | 0.00110 |
| Rep_457_c_0_2377 | vegan > omnivore | 1.80804 | 0.01606 |
| Rep_457_c_0_2377 | vegetarian > omnivore | 1.31174 | 0.00110 |