Cluster: Rep_457_CGC44
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_457
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_457_c_0 | Rep_457_c_0_2353 | 3014670 | 3016316 | + | 4.C.1.1.4 |
| STP | Rep_457_c_0 | Rep_457_c_0_2354 | 3016402 | 3017625 | - | HATPase_c | HisKA |
| pfam | Rep_457_c_0 | Rep_457_c_0_2355 | 3017747 | 3019165 | + | AdoHcyase_NAD | 2-Hacid_dh_C | AdoHcyase | KARI_N |
| TC | Rep_457_c_0 | Rep_457_c_0_2356 | 3019248 | 3021761 | + | 9.B.144.1.4 |
| TF | Rep_457_c_0 | Rep_457_c_0_2357 | 3021852 | 3022730 | - | HTH_AraC | HTH_AraC |
| TC | Rep_457_c_0 | Rep_457_c_0_2358 | 3022914 | 3024299 | + | 2.A.1.1.3 |
| STP | Rep_457_c_0 | Rep_457_c_0_2359 | 3024398 | 3027721 | + | TPR_1 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_2360 | 3027867 | 3029162 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_457_c_0 | Rep_457_c_0_2361 | 3029173 | 3032205 | + | 1.B.14.6.1 |
| TC | Rep_457_c_0 | Rep_457_c_0_2362 | 3032219 | 3033838 | + | 8.A.46.1.5 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2363 | 3033873 | 3035495 | + | GH30_4 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2364 | 3035525 | 3038275 | + | GH2 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_2365 | 3038272 | 3038409 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2366 | 3038509 | 3040278 | + | GH105 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2367 | 3040281 | 3042191 | + | PL17 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_2368 | 3042201 | 3044987 | + | GH2 |
Gene ID: Rep_457_c_0_2353
Type: TC
Location: 3014670 - 3016316 (+)
Type: TC
Location: 3014670 - 3016316 (+)
Gene ID: Rep_457_c_0_2354
Type: STP
Location: 3016402 - 3017625 (-)
Type: STP
Location: 3016402 - 3017625 (-)
Gene ID: Rep_457_c_0_2355
Type: pfam
Location: 3017747 - 3019165 (+)
Type: pfam
Location: 3017747 - 3019165 (+)
Gene ID: Rep_457_c_0_2356
Type: TC
Location: 3019248 - 3021761 (+)
Type: TC
Location: 3019248 - 3021761 (+)
Gene ID: Rep_457_c_0_2357
Type: TF
Location: 3021852 - 3022730 (-)
Type: TF
Location: 3021852 - 3022730 (-)
Gene ID: Rep_457_c_0_2358
Type: TC
Location: 3022914 - 3024299 (+)
Type: TC
Location: 3022914 - 3024299 (+)
Gene ID: Rep_457_c_0_2359
Type: STP
Location: 3024398 - 3027721 (+)
Type: STP
Location: 3024398 - 3027721 (+)
Gene ID: Rep_457_c_0_2360
Type:
Location: 3027867 - 3029162 (+)
Type:
Location: 3027867 - 3029162 (+)
Gene ID: Rep_457_c_0_2361
Type: TC
Location: 3029173 - 3032205 (+)
Type: TC
Location: 3029173 - 3032205 (+)
Gene ID: Rep_457_c_0_2362
Type: TC
Location: 3032219 - 3033838 (+)
Type: TC
Location: 3032219 - 3033838 (+)
Gene ID: Rep_457_c_0_2363
Type: CAZyme
Location: 3033873 - 3035495 (+)
Type: CAZyme
Location: 3033873 - 3035495 (+)
Gene ID: Rep_457_c_0_2364
Type: CAZyme
Location: 3035525 - 3038275 (+)
Type: CAZyme
Location: 3035525 - 3038275 (+)
Gene ID: Rep_457_c_0_2365
Type:
Location: 3038272 - 3038409 (+)
Type:
Location: 3038272 - 3038409 (+)
Gene ID: Rep_457_c_0_2366
Type: CAZyme
Location: 3038509 - 3040278 (+)
Type: CAZyme
Location: 3038509 - 3040278 (+)
Gene ID: Rep_457_c_0_2367
Type: CAZyme
Location: 3040281 - 3042191 (+)
Type: CAZyme
Location: 3040281 - 3042191 (+)
Gene ID: Rep_457_c_0_2368
Type: CAZyme
Location: 3042201 - 3044987 (+)
Type: CAZyme
Location: 3042201 - 3044987 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_2354 | vegan > omnivore | 1.13642 | 0.01606 |
| Rep_457_c_0_2354 | vegetarian > omnivore | 1.75250 | 0.00110 |
| Rep_457_c_0_2357 | vegetarian > omnivore | 1.70567 | 0.00110 |