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Cluster: Rep_457_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_457_c_0 Rep_457_c_0_2216 2787073 2789538 - GH95
CAZyme Rep_457_c_0 Rep_457_c_0_2217 2789717 2792818 - GH2
CAZyme Rep_457_c_0 Rep_457_c_0_2218 2792827 2795175 - GH92
CAZyme Rep_457_c_0 Rep_457_c_0_2219 2795338 2796738 - CBM32
pfam Rep_457_c_0 Rep_457_c_0_2220 2796774 2798687 - SusD_RagB | SusD-like_3
TC Rep_457_c_0 Rep_457_c_0_2221 2798699 2802124 - 1.B.14.6.2
STP Rep_457_c_0 Rep_457_c_0_2222 2802247 2803452 - FecR
STP Rep_457_c_0 Rep_457_c_0_2223 2803603 2804184 - Sigma70_r2 | Sigma70_r4_2
CAZyme Rep_457_c_0 Rep_457_c_0_2224 2804211 2806379 - GH95
pfam Rep_457_c_0 Rep_457_c_0_2225 2806668 2807147 - HU-HIG
CAZyme Rep_457_c_0 Rep_457_c_0_2226 2807669 2810248 - CBM57 | GH2
TC Rep_457_c_0 Rep_457_c_0_2227 2810457 2812394 - 8.A.46.1.6
TC Rep_457_c_0 Rep_457_c_0_2228 2812407 2815625 - 1.B.14.6.1
TF Rep_457_c_0 Rep_457_c_0_2229 2815932 2819936 + HTH_AraC | HTH_AraC
pfam Rep_457_c_0 Rep_457_c_0_2230 2819974 2820591 - HU-HIG
CAZyme Rep_457_c_0 Rep_457_c_0_2231 2820904 2823117 - GH3
CAZyme Rep_457_c_0 Rep_457_c_0_2232 2823329 2825917 - GH2
CAZyme Rep_457_c_0 Rep_457_c_0_2233 2825914 2828796 - GH31_4
TF Rep_457_c_0 Rep_457_c_0_2234 2828933 2832982 - HTH_AraC
CAZyme Rep_457_c_0 Rep_457_c_0_2235 2833207 2835003 - GH5_4
Gene ID: Rep_457_c_0_2216
Type: CAZyme
Location: 2787073 - 2789538 (-)
Gene ID: Rep_457_c_0_2217
Type: CAZyme
Location: 2789717 - 2792818 (-)
Gene ID: Rep_457_c_0_2218
Type: CAZyme
Location: 2792827 - 2795175 (-)
Gene ID: Rep_457_c_0_2219
Type: CAZyme
Location: 2795338 - 2796738 (-)
Gene ID: Rep_457_c_0_2220
Type: pfam
Location: 2796774 - 2798687 (-)
Gene ID: Rep_457_c_0_2221
Type: TC
Location: 2798699 - 2802124 (-)
Gene ID: Rep_457_c_0_2222
Type: STP
Location: 2802247 - 2803452 (-)
Gene ID: Rep_457_c_0_2223
Type: STP
Location: 2803603 - 2804184 (-)
Gene ID: Rep_457_c_0_2224
Type: CAZyme
Location: 2804211 - 2806379 (-)
Gene ID: Rep_457_c_0_2225
Type: pfam
Location: 2806668 - 2807147 (-)
Gene ID: Rep_457_c_0_2226
Type: CAZyme
Location: 2807669 - 2810248 (-)
Gene ID: Rep_457_c_0_2227
Type: TC
Location: 2810457 - 2812394 (-)
Gene ID: Rep_457_c_0_2228
Type: TC
Location: 2812407 - 2815625 (-)
Gene ID: Rep_457_c_0_2229
Type: TF
Location: 2815932 - 2819936 (+)
Gene ID: Rep_457_c_0_2230
Type: pfam
Location: 2819974 - 2820591 (-)
Gene ID: Rep_457_c_0_2231
Type: CAZyme
Location: 2820904 - 2823117 (-)
Gene ID: Rep_457_c_0_2232
Type: CAZyme
Location: 2823329 - 2825917 (-)
Gene ID: Rep_457_c_0_2233
Type: CAZyme
Location: 2825914 - 2828796 (-)
Gene ID: Rep_457_c_0_2234
Type: TF
Location: 2828933 - 2832982 (-)
Gene ID: Rep_457_c_0_2235
Type: CAZyme
Location: 2833207 - 2835003 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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