dbCAN Logo

Cluster: Rep_457_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_457_c_0 Rep_457_c_0_2078 2652299 2653663 - 2.A.6.2.20
TC Rep_457_c_0 Rep_457_c_0_2079 2653779 2656973 - 2.A.6.2.22
TC Rep_457_c_0 Rep_457_c_0_2080 2656977 2658134 - 2.A.6.2.47
TF Rep_457_c_0 Rep_457_c_0_2081 2658307 2659143 + HTH_AraC
TF Rep_457_c_0 Rep_457_c_0_2082 2659271 2660467 + HTH_AraC | HTH_AraC
TC Rep_457_c_0 Rep_457_c_0_2083 2660522 2663677 + 1.B.14.6.2
TC Rep_457_c_0 Rep_457_c_0_2084 2663691 2665280 + 8.A.46.2.2
pfam Rep_457_c_0 Rep_457_c_0_2085 2665311 2665664 + PKD_3
CAZyme Rep_457_c_0 Rep_457_c_0_2086 2665681 2666718 + GH18
NULL(UNKNOWN) Rep_457_c_0 Rep_457_c_0_2087 2666961 2668082 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_457_c_0 Rep_457_c_0_2088 2668089 2669420 + 2.A.1.7.9
CAZyme Rep_457_c_0 Rep_457_c_0_2089 2669396 2670592 + CE9
pfam Rep_457_c_0 Rep_457_c_0_2090 2670589 2671356 + Glucosamine_iso
CAZyme Rep_457_c_0 Rep_457_c_0_2091 2671369 2672919 + GH20
CAZyme Rep_457_c_0 Rep_457_c_0_2092 2673021 2675351 + GH20
TC Rep_457_c_0 Rep_457_c_0_2093 2675384 2676865 - 2.A.50.2.1
Gene ID: Rep_457_c_0_2078
Type: TC
Location: 2652299 - 2653663 (-)
Gene ID: Rep_457_c_0_2079
Type: TC
Location: 2653779 - 2656973 (-)
Gene ID: Rep_457_c_0_2080
Type: TC
Location: 2656977 - 2658134 (-)
Gene ID: Rep_457_c_0_2081
Type: TF
Location: 2658307 - 2659143 (+)
Gene ID: Rep_457_c_0_2082
Type: TF
Location: 2659271 - 2660467 (+)
Gene ID: Rep_457_c_0_2083
Type: TC
Location: 2660522 - 2663677 (+)
Gene ID: Rep_457_c_0_2084
Type: TC
Location: 2663691 - 2665280 (+)
Gene ID: Rep_457_c_0_2085
Type: pfam
Location: 2665311 - 2665664 (+)
Gene ID: Rep_457_c_0_2086
Type: CAZyme
Location: 2665681 - 2666718 (+)
Gene ID: Rep_457_c_0_2087
Type:
Location: 2666961 - 2668082 (+)
Gene ID: Rep_457_c_0_2088
Type: TC
Location: 2668089 - 2669420 (+)
Gene ID: Rep_457_c_0_2089
Type: CAZyme
Location: 2669396 - 2670592 (+)
Gene ID: Rep_457_c_0_2090
Type: pfam
Location: 2670589 - 2671356 (+)
Gene ID: Rep_457_c_0_2091
Type: CAZyme
Location: 2671369 - 2672919 (+)
Gene ID: Rep_457_c_0_2092
Type: CAZyme
Location: 2673021 - 2675351 (+)
Gene ID: Rep_457_c_0_2093
Type: TC
Location: 2675384 - 2676865 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_2078 vegetarian > omnivore 1.99867 0.00110
Rep_457_c_0_2078 vegetarian > vegan 1.08892 0.02135
Rep_457_c_0_2081 vegetarian > omnivore 2.08818 0.00110
Rep_457_c_0_2081 vegetarian > vegan 1.10423 0.02193
Rep_457_c_0_2082 vegan > omnivore 1.94943 0.01606
Rep_457_c_0_2082 vegetarian > omnivore 2.22562 0.00110
Rep_457_c_0_2083 vegan > omnivore 1.48684 0.01606
Rep_457_c_0_2083 vegetarian > omnivore 1.91075 0.00110
Rep_457_c_0_2084 vegan > omnivore 1.27733 0.01606
Rep_457_c_0_2084 vegetarian > omnivore 1.92108 0.00110
Rep_457_c_0_2085 vegan > omnivore 1.53261 0.01606
Rep_457_c_0_2085 vegetarian > omnivore 2.40630 0.00110
Rep_457_c_0_2086 vegetarian > omnivore 2.34401 0.00110
Rep_457_c_0_2086 vegan > omnivore 1.78699 0.01606
Rep_457_c_0_2087 vegetarian > omnivore 2.96942 0.00110
Rep_457_c_0_2087 vegan > omnivore 2.42437 0.01606
Rep_457_c_0_2088 vegetarian > omnivore 2.59992 0.00110
Rep_457_c_0_2088 vegan > omnivore 2.02712 0.01606
Rep_457_c_0_2089 vegetarian > omnivore 2.40285 0.00110
Rep_457_c_0_2089 vegan > omnivore 1.89707 0.01606
Rep_457_c_0_2090 vegetarian > omnivore 3.22979 0.00110
Rep_457_c_0_2090 vegan > omnivore 2.76671 0.01606
Rep_457_c_0_2091 vegetarian > omnivore 1.97879 0.00110
Rep_457_c_0_2091 vegan > omnivore 1.70008 0.01606
Rep_457_c_0_2092 vegetarian > omnivore 1.53967 0.00110

🧭 Explore Read Mapping of CGC

← Back to Cluster List