Cluster: Rep_457_CGC39
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_05862
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1967 | 2503792 | 2505234 | - | GH51_6 |
| pfam | Rep_457_c_0 | Rep_457_c_0_1968 | 2505263 | 2507077 | - | DUF5107 | BDI_1685-like_C |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1969 | 2507090 | 2509492 | - | GH35 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1970 | 2509498 | 2510892 | - | GH136 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1971 | 2510907 | 2513201 | - | GH20 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1972 | 2513235 | 2514764 | - | GH136 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1973 | 2514790 | 2516205 | - | CE20 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1974 | 2516210 | 2518954 | - | GH35 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1975 | 2518973 | 2522413 | - | GH2 | GH43_24 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1976 | 2522445 | 2524847 | - | GH2 |
| TC | Rep_457_c_0 | Rep_457_c_0_1977 | 2524928 | 2526481 | - | 8.A.46.1.3 |
| TC | Rep_457_c_0 | Rep_457_c_0_1978 | 2526500 | 2529577 | - | 1.B.14.6.1 |
Gene ID: Rep_457_c_0_1967
Type: CAZyme
Location: 2503792 - 2505234 (-)
Type: CAZyme
Location: 2503792 - 2505234 (-)
Gene ID: Rep_457_c_0_1968
Type: pfam
Location: 2505263 - 2507077 (-)
Type: pfam
Location: 2505263 - 2507077 (-)
Gene ID: Rep_457_c_0_1969
Type: CAZyme
Location: 2507090 - 2509492 (-)
Type: CAZyme
Location: 2507090 - 2509492 (-)
Gene ID: Rep_457_c_0_1970
Type: CAZyme
Location: 2509498 - 2510892 (-)
Type: CAZyme
Location: 2509498 - 2510892 (-)
Gene ID: Rep_457_c_0_1971
Type: CAZyme
Location: 2510907 - 2513201 (-)
Type: CAZyme
Location: 2510907 - 2513201 (-)
Gene ID: Rep_457_c_0_1972
Type: CAZyme
Location: 2513235 - 2514764 (-)
Type: CAZyme
Location: 2513235 - 2514764 (-)
Gene ID: Rep_457_c_0_1973
Type: CAZyme
Location: 2514790 - 2516205 (-)
Type: CAZyme
Location: 2514790 - 2516205 (-)
Gene ID: Rep_457_c_0_1974
Type: CAZyme
Location: 2516210 - 2518954 (-)
Type: CAZyme
Location: 2516210 - 2518954 (-)
Gene ID: Rep_457_c_0_1975
Type: CAZyme
Location: 2518973 - 2522413 (-)
Type: CAZyme
Location: 2518973 - 2522413 (-)
Gene ID: Rep_457_c_0_1976
Type: CAZyme
Location: 2522445 - 2524847 (-)
Type: CAZyme
Location: 2522445 - 2524847 (-)
Gene ID: Rep_457_c_0_1977
Type: TC
Location: 2524928 - 2526481 (-)
Type: TC
Location: 2524928 - 2526481 (-)
Gene ID: Rep_457_c_0_1978
Type: TC
Location: 2526500 - 2529577 (-)
Type: TC
Location: 2526500 - 2529577 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_1967 | vegan > omnivore | 2.49605 | 0.01606 |
| Rep_457_c_0_1968 | vegan > omnivore | 2.44591 | 0.01606 |
| Rep_457_c_0_1969 | vegan > omnivore | 2.62611 | 0.01606 |
| Rep_457_c_0_1970 | vegan > omnivore | 3.01696 | 0.01606 |
| Rep_457_c_0_1971 | vegan > omnivore | 2.81604 | 0.01606 |
| Rep_457_c_0_1972 | vegan > omnivore | 3.22503 | 0.01606 |
| Rep_457_c_0_1973 | vegan > omnivore | 2.05290 | 0.01606 |
| Rep_457_c_0_1974 | vegan > omnivore | 2.42473 | 0.01606 |
| Rep_457_c_0_1975 | vegan > omnivore | 2.12265 | 0.01606 |
| Rep_457_c_0_1976 | vegan > omnivore | 1.48891 | 0.01606 |
| Rep_457_c_0_1977 | vegan > omnivore | 2.25891 | 0.01606 |
| Rep_457_c_0_1978 | vegan > omnivore | 2.80229 | 0.01606 |