Cluster: Rep_457_CGC32
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_00676
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1554 | 1951269 | 1952678 | + | GH140 |
| TF | Rep_457_c_0 | Rep_457_c_0_1555 | 1952906 | 1957378 | - | HTH_AraC |
| TF | Rep_457_c_0 | Rep_457_c_0_1556 | 1957464 | 1961882 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1557 | 1962071 | 1963216 | - | CE19 |
| pfam | Rep_457_c_0 | Rep_457_c_0_1558 | 1963218 | 1965347 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_457_c_0 | Rep_457_c_0_1559 | 1965379 | 1968720 | - | 1.B.14.6.1 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1560 | 1968986 | 1970302 | - | CE7 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1561 | 1970348 | 1972114 | - | CE12 | CE8 |
| pfam | Rep_457_c_0 | Rep_457_c_0_1562 | 1972262 | 1972609 | + | AraC_binding | Cupin_2 | Cupin_7 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1563 | 1972724 | 1973692 | - | CE8 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1564 | 1973697 | 1974917 | - | GH105 |
| TC | Rep_457_c_0 | Rep_457_c_0_1565 | 1975219 | 1976736 | + | 2.A.1.14.25 |
| pfam | Rep_457_c_0 | Rep_457_c_0_1566 | 1977149 | 1980541 | - | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| TC | Rep_457_c_0 | Rep_457_c_0_1567 | 1980541 | 1981362 | - | 2.A.64.3.2 |
Gene ID: Rep_457_c_0_1554
Type: CAZyme
Location: 1951269 - 1952678 (+)
Type: CAZyme
Location: 1951269 - 1952678 (+)
Gene ID: Rep_457_c_0_1555
Type: TF
Location: 1952906 - 1957378 (-)
Type: TF
Location: 1952906 - 1957378 (-)
Gene ID: Rep_457_c_0_1556
Type: TF
Location: 1957464 - 1961882 (+)
Type: TF
Location: 1957464 - 1961882 (+)
Gene ID: Rep_457_c_0_1557
Type: CAZyme
Location: 1962071 - 1963216 (-)
Type: CAZyme
Location: 1962071 - 1963216 (-)
Gene ID: Rep_457_c_0_1558
Type: pfam
Location: 1963218 - 1965347 (-)
Type: pfam
Location: 1963218 - 1965347 (-)
Gene ID: Rep_457_c_0_1559
Type: TC
Location: 1965379 - 1968720 (-)
Type: TC
Location: 1965379 - 1968720 (-)
Gene ID: Rep_457_c_0_1560
Type: CAZyme
Location: 1968986 - 1970302 (-)
Type: CAZyme
Location: 1968986 - 1970302 (-)
Gene ID: Rep_457_c_0_1561
Type: CAZyme
Location: 1970348 - 1972114 (-)
Type: CAZyme
Location: 1970348 - 1972114 (-)
Gene ID: Rep_457_c_0_1562
Type: pfam
Location: 1972262 - 1972609 (+)
Type: pfam
Location: 1972262 - 1972609 (+)
Gene ID: Rep_457_c_0_1563
Type: CAZyme
Location: 1972724 - 1973692 (-)
Type: CAZyme
Location: 1972724 - 1973692 (-)
Gene ID: Rep_457_c_0_1564
Type: CAZyme
Location: 1973697 - 1974917 (-)
Type: CAZyme
Location: 1973697 - 1974917 (-)
Gene ID: Rep_457_c_0_1565
Type: TC
Location: 1975219 - 1976736 (+)
Type: TC
Location: 1975219 - 1976736 (+)
Gene ID: Rep_457_c_0_1566
Type: pfam
Location: 1977149 - 1980541 (-)
Type: pfam
Location: 1977149 - 1980541 (-)
Gene ID: Rep_457_c_0_1567
Type: TC
Location: 1980541 - 1981362 (-)
Type: TC
Location: 1980541 - 1981362 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_1557 | vegetarian > omnivore | 1.34295 | 0.00110 |
| Rep_457_c_0_1558 | vegan > omnivore | 1.45579 | 0.01606 |
| Rep_457_c_0_1558 | vegetarian > omnivore | 1.94074 | 0.00110 |
| Rep_457_c_0_1559 | vegan > omnivore | 1.11975 | 0.01606 |
| Rep_457_c_0_1559 | vegetarian > omnivore | 1.51621 | 0.00110 |
| Rep_457_c_0_1562 | vegan > omnivore | 1.65589 | 0.01606 |
| Rep_457_c_0_1562 | vegetarian > omnivore | 1.42051 | 0.00110 |