Cluster: Rep_457_CGC29
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_00542
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1400 | 1755051 | 1756328 | - | CE12 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1401 | 1756708 | 1757835 | - | GH105 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1402 | 1758048 | 1760162 | + | GH42 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_1403 | 1760339 | 1761955 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_457_c_0 | Rep_457_c_0_1404 | 1761968 | 1763122 | - | DUF4249 |
| TC | Rep_457_c_0 | Rep_457_c_0_1405 | 1763129 | 1765861 | - | 1.B.14.6.12 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_1406 | 1765864 | 1766553 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_457_c_0 | Rep_457_c_0_1407 | 1766952 | 1770083 | + | 1.B.14.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_1408 | 1770110 | 1772194 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1409 | 1772323 | 1775298 | + | GH2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1410 | 1775392 | 1777392 | + | PL11_1 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1411 | 1777421 | 1778827 | + | GH105 |
Gene ID: Rep_457_c_0_1400
Type: CAZyme
Location: 1755051 - 1756328 (-)
Type: CAZyme
Location: 1755051 - 1756328 (-)
Gene ID: Rep_457_c_0_1401
Type: CAZyme
Location: 1756708 - 1757835 (-)
Type: CAZyme
Location: 1756708 - 1757835 (-)
Gene ID: Rep_457_c_0_1402
Type: CAZyme
Location: 1758048 - 1760162 (+)
Type: CAZyme
Location: 1758048 - 1760162 (+)
Gene ID: Rep_457_c_0_1403
Type:
Location: 1760339 - 1761955 (-)
Type:
Location: 1760339 - 1761955 (-)
Gene ID: Rep_457_c_0_1404
Type: pfam
Location: 1761968 - 1763122 (-)
Type: pfam
Location: 1761968 - 1763122 (-)
Gene ID: Rep_457_c_0_1405
Type: TC
Location: 1763129 - 1765861 (-)
Type: TC
Location: 1763129 - 1765861 (-)
Gene ID: Rep_457_c_0_1406
Type:
Location: 1765864 - 1766553 (-)
Type:
Location: 1765864 - 1766553 (-)
Gene ID: Rep_457_c_0_1407
Type: TC
Location: 1766952 - 1770083 (+)
Type: TC
Location: 1766952 - 1770083 (+)
Gene ID: Rep_457_c_0_1408
Type: pfam
Location: 1770110 - 1772194 (+)
Type: pfam
Location: 1770110 - 1772194 (+)
Gene ID: Rep_457_c_0_1409
Type: CAZyme
Location: 1772323 - 1775298 (+)
Type: CAZyme
Location: 1772323 - 1775298 (+)
Gene ID: Rep_457_c_0_1410
Type: CAZyme
Location: 1775392 - 1777392 (+)
Type: CAZyme
Location: 1775392 - 1777392 (+)
Gene ID: Rep_457_c_0_1411
Type: CAZyme
Location: 1777421 - 1778827 (+)
Type: CAZyme
Location: 1777421 - 1778827 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_1401 | vegan > omnivore | 1.34778 | 0.01606 |
| Rep_457_c_0_1401 | vegetarian > omnivore | 2.04236 | 0.00110 |
| Rep_457_c_0_1403 | vegan > omnivore | 1.15027 | 0.01606 |
| Rep_457_c_0_1406 | vegan > omnivore | 2.26532 | 0.01606 |
| Rep_457_c_0_1406 | vegetarian > omnivore | 1.24710 | 0.00110 |
| Rep_457_c_0_1408 | vegan > omnivore | 1.28830 | 0.01606 |