Cluster: Rep_457_CGC28
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_457
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1388 | 1744271 | 1745095 | + | GT5 |
| pfam | Rep_457_c_0 | Rep_457_c_0_1389 | 1745116 | 1746639 | + | DUF4270 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1390 | 1746736 | 1748157 | - | GH57 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1391 | 1748176 | 1749447 | - | GT4 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_1392 | 1749462 | 1751402 | - | GH133 |
| NULL(UNKNOWN) | Rep_457_c_0 | Rep_457_c_0_1393 | 1751440 | 1751559 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_457_c_0 | Rep_457_c_0_1394 | 1751594 | 1752295 | + | 9.B.104.3.2 |
| TC | Rep_457_c_0 | Rep_457_c_0_1395 | 1752290 | 1752916 | - | 2.A.124.1.4 |
Gene ID: Rep_457_c_0_1388
Type: CAZyme
Location: 1744271 - 1745095 (+)
Type: CAZyme
Location: 1744271 - 1745095 (+)
Gene ID: Rep_457_c_0_1389
Type: pfam
Location: 1745116 - 1746639 (+)
Type: pfam
Location: 1745116 - 1746639 (+)
Gene ID: Rep_457_c_0_1390
Type: CAZyme
Location: 1746736 - 1748157 (-)
Type: CAZyme
Location: 1746736 - 1748157 (-)
Gene ID: Rep_457_c_0_1391
Type: CAZyme
Location: 1748176 - 1749447 (-)
Type: CAZyme
Location: 1748176 - 1749447 (-)
Gene ID: Rep_457_c_0_1392
Type: CAZyme
Location: 1749462 - 1751402 (-)
Type: CAZyme
Location: 1749462 - 1751402 (-)
Gene ID: Rep_457_c_0_1393
Type:
Location: 1751440 - 1751559 (+)
Type:
Location: 1751440 - 1751559 (+)
Gene ID: Rep_457_c_0_1394
Type: TC
Location: 1751594 - 1752295 (+)
Type: TC
Location: 1751594 - 1752295 (+)
Gene ID: Rep_457_c_0_1395
Type: TC
Location: 1752290 - 1752916 (-)
Type: TC
Location: 1752290 - 1752916 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_1389 | vegan > omnivore | 1.90878 | 0.01606 |
| Rep_457_c_0_1389 | vegetarian > omnivore | 1.57409 | 0.00110 |
| Rep_457_c_0_1393 | vegan > omnivore | 1.08618 | 0.01606 |
| Rep_457_c_0_1394 | vegan > omnivore | 1.09124 | 0.01606 |
| Rep_457_c_0_1394 | vegetarian > omnivore | 1.09739 | 0.00110 |
| Rep_457_c_0_1395 | vegan > omnivore | 2.55743 | 0.01479 |
| Rep_457_c_0_1395 | vegetarian > omnivore | 2.34411 | 0.00110 |