dbCAN HGM

Cluster: Rep_457_CGC20

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_457_c_0	Rep_457_c_0_1230	1505762	1508173	+	1.B.14.6.7
STP	Rep_457_c_0	Rep_457_c_0_1231	1508318	1508728	+	Glyoxalase
TC	Rep_457_c_0	Rep_457_c_0_1232	1508843	1510396	+	3.B.1.1.2
pfam	Rep_457_c_0	Rep_457_c_0_1233	1510429	1511361	+	LTD \| OAD_gamma
TC	Rep_457_c_0	Rep_457_c_0_1234	1511384	1511809	+	3.B.1.1.2
TC	Rep_457_c_0	Rep_457_c_0_1235	1511811	1512971	+	3.B.1.1.2
STP	Rep_457_c_0	Rep_457_c_0_1236	1513156	1514523	+	TPR_1
CAZyme	Rep_457_c_0	Rep_457_c_0_1237	1514635	1516485	+	GH13_46

Gene ID: Rep_457_c_0_1230
Type: TC
Location: 1505762 - 1508173 (+)

Gene ID: Rep_457_c_0_1231
Type: STP
Location: 1508318 - 1508728 (+)

Gene ID: Rep_457_c_0_1232
Type: TC
Location: 1508843 - 1510396 (+)

Gene ID: Rep_457_c_0_1233
Type: pfam
Location: 1510429 - 1511361 (+)

Gene ID: Rep_457_c_0_1234
Type: TC
Location: 1511384 - 1511809 (+)

Gene ID: Rep_457_c_0_1235
Type: TC
Location: 1511811 - 1512971 (+)

Gene ID: Rep_457_c_0_1236
Type: STP
Location: 1513156 - 1514523 (+)

Gene ID: Rep_457_c_0_1237
Type: CAZyme
Location: 1514635 - 1516485 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_457_c_0_1230	vegan > omnivore	1.25839	0.01606
Rep_457_c_0_1230	vegetarian > omnivore	2.40191	0.00110
Rep_457_c_0_1230	vegetarian > vegan	1.14352	0.02193
Rep_457_c_0_1236	vegetarian > omnivore	2.06021	0.00110
Rep_457_c_0_1236	vegetarian > vegan	1.06128	0.02193

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_457_c_0_1230	vegan > omnivore	1.08094	0.00019