dbCAN HGM

Cluster: Rep_457_CGC16

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	Rep_457_c_0	Rep_457_c_0_1025	1276628	1277581	+	GT2
pfam	Rep_457_c_0	Rep_457_c_0_1026	1277585	1278088	+	DUF6452
pfam	Rep_457_c_0	Rep_457_c_0_1027	1278048	1278818	+	DUF6048
TC	Rep_457_c_0	Rep_457_c_0_1028	1278822	1279403	+	2.A.107.1.2
pfam	Rep_457_c_0	Rep_457_c_0_1029	1279413	1280435	+	ApbE
TC	Rep_457_c_0	Rep_457_c_0_1030	1280670	1281038	-	2.A.7.34.3

Gene ID: Rep_457_c_0_1025
Type: CAZyme
Location: 1276628 - 1277581 (+)

Gene ID: Rep_457_c_0_1026
Type: pfam
Location: 1277585 - 1278088 (+)

Gene ID: Rep_457_c_0_1027
Type: pfam
Location: 1278048 - 1278818 (+)

Gene ID: Rep_457_c_0_1028
Type: TC
Location: 1278822 - 1279403 (+)

Gene ID: Rep_457_c_0_1029
Type: pfam
Location: 1279413 - 1280435 (+)

Gene ID: Rep_457_c_0_1030
Type: TC
Location: 1280670 - 1281038 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_457_c_0_1027	vegan > omnivore	1.46702	0.01606
Rep_457_c_0_1027	vegetarian > omnivore	2.27042	0.00110
Rep_457_c_0_1028	vegan > omnivore	1.99591	0.01606
Rep_457_c_0_1028	vegetarian > omnivore	3.05333	0.00110
Rep_457_c_0_1028	vegetarian > vegan	1.05742	0.02193
Rep_457_c_0_1029	vegetarian > omnivore	1.22569	0.00110
Rep_457_c_0_1030	vegan > omnivore	1.18943	0.01606

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_457_c_0_1028	vegan > omnivore	1.48314	0.00019