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Cluster: Rep_457_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_457_c_0 Rep_457_c_0_858 1082800 1086180 + CBM91 | GH43_19 | GH43_34 | GH43_9
CAZyme Rep_457_c_0 Rep_457_c_0_859 1086192 1089314 + GH2
CAZyme Rep_457_c_0 Rep_457_c_0_860 1089397 1090809 + GH28
pfam Rep_457_c_0 Rep_457_c_0_861 1090903 1092345 + AhpC-TSA | Redoxin | Thioredoxin_8
NULL(UNKNOWN) Rep_457_c_0 Rep_457_c_0_862 1092533 1094176 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_457_c_0 Rep_457_c_0_863 1094238 1096181 + GH97
CAZyme Rep_457_c_0 Rep_457_c_0_864 1096327 1097976 + CBM91 | GH43_10
CAZyme Rep_457_c_0 Rep_457_c_0_865 1097990 1099213 + GH88
TC Rep_457_c_0 Rep_457_c_0_866 1099232 1101556 - 2.A.21.9.2
Gene ID: Rep_457_c_0_858
Type: CAZyme
Location: 1082800 - 1086180 (+)
Gene ID: Rep_457_c_0_859
Type: CAZyme
Location: 1086192 - 1089314 (+)
Gene ID: Rep_457_c_0_860
Type: CAZyme
Location: 1089397 - 1090809 (+)
Gene ID: Rep_457_c_0_861
Type: pfam
Location: 1090903 - 1092345 (+)
Gene ID: Rep_457_c_0_862
Type:
Location: 1092533 - 1094176 (+)
Gene ID: Rep_457_c_0_863
Type: CAZyme
Location: 1094238 - 1096181 (+)
Gene ID: Rep_457_c_0_864
Type: CAZyme
Location: 1096327 - 1097976 (+)
Gene ID: Rep_457_c_0_865
Type: CAZyme
Location: 1097990 - 1099213 (+)
Gene ID: Rep_457_c_0_866
Type: TC
Location: 1099232 - 1101556 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_861 vegan > omnivore 1.97982 0.01606
Rep_457_c_0_861 vegetarian > omnivore 2.63907 0.00110
Rep_457_c_0_866 vegan > omnivore 1.54684 0.01606
Rep_457_c_0_866 vegetarian > omnivore 1.69442 0.00110

🧭 Explore Read Mapping of CGC

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