Cluster: Rep_457_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 6
- Substrate: pectin
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_01248
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_806 | 998738 | 1001833 | - | PL29 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_807 | 1001864 | 1003546 | - | PL1_2 |
| TF | Rep_457_c_0 | Rep_457_c_0_808 | 1003605 | 1007993 | - | HTH_AraC |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_809 | 1008112 | 1010745 | - | GH2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_810 | 1010765 | 1012981 | - | GH139 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_811 | 1013105 | 1014538 | - | CE20 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_812 | 1015090 | 1018377 | - | GH106 |
| STP | Rep_457_c_0 | Rep_457_c_0_813 | 1018744 | 1021164 | + | GAF | HATPase_c | HisKA |
| TC | Rep_457_c_0 | Rep_457_c_0_814 | 1021216 | 1022418 | + | 2.A.1.35.1 |
Gene ID: Rep_457_c_0_806
Type: CAZyme
Location: 998738 - 1001833 (-)
Type: CAZyme
Location: 998738 - 1001833 (-)
Gene ID: Rep_457_c_0_807
Type: CAZyme
Location: 1001864 - 1003546 (-)
Type: CAZyme
Location: 1001864 - 1003546 (-)
Gene ID: Rep_457_c_0_808
Type: TF
Location: 1003605 - 1007993 (-)
Type: TF
Location: 1003605 - 1007993 (-)
Gene ID: Rep_457_c_0_809
Type: CAZyme
Location: 1008112 - 1010745 (-)
Type: CAZyme
Location: 1008112 - 1010745 (-)
Gene ID: Rep_457_c_0_810
Type: CAZyme
Location: 1010765 - 1012981 (-)
Type: CAZyme
Location: 1010765 - 1012981 (-)
Gene ID: Rep_457_c_0_811
Type: CAZyme
Location: 1013105 - 1014538 (-)
Type: CAZyme
Location: 1013105 - 1014538 (-)
Gene ID: Rep_457_c_0_812
Type: CAZyme
Location: 1015090 - 1018377 (-)
Type: CAZyme
Location: 1015090 - 1018377 (-)
Gene ID: Rep_457_c_0_813
Type: STP
Location: 1018744 - 1021164 (+)
Type: STP
Location: 1018744 - 1021164 (+)
Gene ID: Rep_457_c_0_814
Type: TC
Location: 1021216 - 1022418 (+)
Type: TC
Location: 1021216 - 1022418 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_813 | vegetarian > omnivore | 1.20806 | 0.00110 |
| Rep_457_c_0_814 | vegetarian > omnivore | 1.49134 | 0.00110 |