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Cluster: Rep_457_CGC115

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_457_c_0 Rep_457_c_0_5103 6758968 6760176 + GT2
pfam Rep_457_c_0 Rep_457_c_0_5104 6760179 6760712 + Acetyltransf_1 | Acetyltransf_3 | Acetyltransf_4
pfam Rep_457_c_0 Rep_457_c_0_5105 6760709 6761302 - DUF179
TC Rep_457_c_0 Rep_457_c_0_5106 6761447 6764554 + 1.B.14.6.13
TC Rep_457_c_0 Rep_457_c_0_5107 6764554 6766155 + 8.A.46.2.1
Gene ID: Rep_457_c_0_5103
Type: CAZyme
Location: 6758968 - 6760176 (+)
Gene ID: Rep_457_c_0_5104
Type: pfam
Location: 6760179 - 6760712 (+)
Gene ID: Rep_457_c_0_5105
Type: pfam
Location: 6760709 - 6761302 (-)
Gene ID: Rep_457_c_0_5106
Type: TC
Location: 6761447 - 6764554 (+)
Gene ID: Rep_457_c_0_5107
Type: TC
Location: 6764554 - 6766155 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_5103 vegan > omnivore 1.26547 0.01606
Rep_457_c_0_5104 vegan > omnivore 1.44885 0.01606
Rep_457_c_0_5104 vegetarian > omnivore 1.02862 0.00110
Rep_457_c_0_5105 vegan > omnivore 2.89068 0.01606
Rep_457_c_0_5105 vegetarian > omnivore 2.29746 0.00110
Rep_457_c_0_5106 vegan > omnivore 1.40575 0.01606
Rep_457_c_0_5106 vegetarian > omnivore 1.34861 0.00110
Rep_457_c_0_5107 vegetarian > omnivore 1.25763 0.00110

🧭 Explore Read Mapping of CGC

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