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Cluster: Rep_457_CGC108

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_457_c_0 Rep_457_c_0_4734 6338209 6340203 + CBM51 | GH27
pfam Rep_457_c_0 Rep_457_c_0_4735 6340292 6341602 - SusD_RagB | SusD-like_3
TC Rep_457_c_0 Rep_457_c_0_4736 6341641 6344907 - 1.B.14.6.1
pfam Rep_457_c_0 Rep_457_c_0_4737 6345036 6347663 - DUF4953 | DUF5117 | DUF5118
pfam Rep_457_c_0 Rep_457_c_0_4738 6347992 6349173 - DnaJ | DnaJ_CXXCXGXG | DnaJ_C
TC Rep_457_c_0 Rep_457_c_0_4739 6349184 6349816 - 3.A.8.1.1
TC Rep_457_c_0 Rep_457_c_0_4740 6350035 6351651 + 3.A.1.121.4
Gene ID: Rep_457_c_0_4734
Type: CAZyme
Location: 6338209 - 6340203 (+)
Gene ID: Rep_457_c_0_4735
Type: pfam
Location: 6340292 - 6341602 (-)
Gene ID: Rep_457_c_0_4736
Type: TC
Location: 6341641 - 6344907 (-)
Gene ID: Rep_457_c_0_4737
Type: pfam
Location: 6345036 - 6347663 (-)
Gene ID: Rep_457_c_0_4738
Type: pfam
Location: 6347992 - 6349173 (-)
Gene ID: Rep_457_c_0_4739
Type: TC
Location: 6349184 - 6349816 (-)
Gene ID: Rep_457_c_0_4740
Type: TC
Location: 6350035 - 6351651 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_4735 vegan > omnivore 1.33016 0.01606
Rep_457_c_0_4735 vegetarian > omnivore 1.23567 0.00110

🧭 Explore Read Mapping of CGC

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