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Cluster: Rep_457_CGC106

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_457_c_0 Rep_457_c_0_4657 6229314 6232502 - 1.B.14.6.2
pfam Rep_457_c_0 Rep_457_c_0_4658 6232516 6234288 - SusD_RagB | SusD-like_3
TC Rep_457_c_0 Rep_457_c_0_4659 6234300 6237419 - 1.B.14.6.1
pfam Rep_457_c_0 Rep_457_c_0_4660 6237445 6239682 - Laminin_G_3 | Laminin_G_3
TF Rep_457_c_0 Rep_457_c_0_4661 6240180 6244409 - HTH_AraC
CAZyme Rep_457_c_0 Rep_457_c_0_4662 6244629 6246200 + GH51_1
CAZyme Rep_457_c_0 Rep_457_c_0_4663 6246454 6248550 + GH51_1
CAZyme Rep_457_c_0 Rep_457_c_0_4664 6248670 6250157 + GH43_4
CAZyme Rep_457_c_0 Rep_457_c_0_4665 6250184 6252166 + GH51_2
CAZyme Rep_457_c_0 Rep_457_c_0_4666 6252172 6253152 + GH43_29
Gene ID: Rep_457_c_0_4657
Type: TC
Location: 6229314 - 6232502 (-)
Gene ID: Rep_457_c_0_4658
Type: pfam
Location: 6232516 - 6234288 (-)
Gene ID: Rep_457_c_0_4659
Type: TC
Location: 6234300 - 6237419 (-)
Gene ID: Rep_457_c_0_4660
Type: pfam
Location: 6237445 - 6239682 (-)
Gene ID: Rep_457_c_0_4661
Type: TF
Location: 6240180 - 6244409 (-)
Gene ID: Rep_457_c_0_4662
Type: CAZyme
Location: 6244629 - 6246200 (+)
Gene ID: Rep_457_c_0_4663
Type: CAZyme
Location: 6246454 - 6248550 (+)
Gene ID: Rep_457_c_0_4664
Type: CAZyme
Location: 6248670 - 6250157 (+)
Gene ID: Rep_457_c_0_4665
Type: CAZyme
Location: 6250184 - 6252166 (+)
Gene ID: Rep_457_c_0_4666
Type: CAZyme
Location: 6252172 - 6253152 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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