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Cluster: Rep_457_CGC103

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_457_c_0 Rep_457_c_0_4601 6155060 6156064 + GT2
NULL(UNKNOWN) Rep_457_c_0 Rep_457_c_0_4602 6156226 6157578 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_457_c_0 Rep_457_c_0_4603 6157686 6158663 + GT2
CAZyme Rep_457_c_0 Rep_457_c_0_4604 6158673 6159536 + GT2
CAZyme Rep_457_c_0 Rep_457_c_0_4605 6159546 6160592 + GT4
pfam Rep_457_c_0 Rep_457_c_0_4606 6160669 6161565 + 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
TC Rep_457_c_0 Rep_457_c_0_4607 6161663 6162613 + 9.B.146.1.7
Gene ID: Rep_457_c_0_4601
Type: CAZyme
Location: 6155060 - 6156064 (+)
Gene ID: Rep_457_c_0_4602
Type:
Location: 6156226 - 6157578 (+)
Gene ID: Rep_457_c_0_4603
Type: CAZyme
Location: 6157686 - 6158663 (+)
Gene ID: Rep_457_c_0_4604
Type: CAZyme
Location: 6158673 - 6159536 (+)
Gene ID: Rep_457_c_0_4605
Type: CAZyme
Location: 6159546 - 6160592 (+)
Gene ID: Rep_457_c_0_4606
Type: pfam
Location: 6160669 - 6161565 (+)
Gene ID: Rep_457_c_0_4607
Type: TC
Location: 6161663 - 6162613 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_4607 vegan > omnivore 1.06541 0.01606

🧭 Explore Read Mapping of CGC

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