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Cluster: Rep_457_CGC101

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_457_c_0 Rep_457_c_0_4553 6091718 6093979 - GH39
NULL(UNKNOWN) Rep_457_c_0 Rep_457_c_0_4554 6093984 6094226 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_457_c_0 Rep_457_c_0_4555 6094161 6096071 - 8.A.46.1.6
TC Rep_457_c_0 Rep_457_c_0_4556 6096084 6099311 - 1.B.14.6.1
NULL(UNKNOWN) Rep_457_c_0 Rep_457_c_0_4557 6099479 6099709 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_457_c_0 Rep_457_c_0_4558 6099722 6101560 + PL35
CAZyme Rep_457_c_0 Rep_457_c_0_4559 6101593 6102765 + GH88
TF Rep_457_c_0 Rep_457_c_0_4560 6103287 6103694 - LacI | LacI
TF Rep_457_c_0 Rep_457_c_0_4561 6103834 6107784 + 0035607
CAZyme Rep_457_c_0 Rep_457_c_0_4562 6107980 6109398 - CE20
CAZyme Rep_457_c_0 Rep_457_c_0_4563 6109664 6111664 + GH97
CAZyme Rep_457_c_0 Rep_457_c_0_4564 6111678 6113462 + GH2
CAZyme Rep_457_c_0 Rep_457_c_0_4565 6113467 6115680 + GH3
CAZyme Rep_457_c_0 Rep_457_c_0_4566 6115681 6117837 + PL8_3
NULL(UNKNOWN) Rep_457_c_0 Rep_457_c_0_4567 6117919 6118020 + NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_457_c_0 Rep_457_c_0_4568 6117978 6119969 - PIG-L
CAZyme Rep_457_c_0 Rep_457_c_0_4569 6120253 6122478 - GT51
Gene ID: Rep_457_c_0_4553
Type: CAZyme
Location: 6091718 - 6093979 (-)
Gene ID: Rep_457_c_0_4554
Type:
Location: 6093984 - 6094226 (+)
Gene ID: Rep_457_c_0_4555
Type: TC
Location: 6094161 - 6096071 (-)
Gene ID: Rep_457_c_0_4556
Type: TC
Location: 6096084 - 6099311 (-)
Gene ID: Rep_457_c_0_4557
Type:
Location: 6099479 - 6099709 (+)
Gene ID: Rep_457_c_0_4558
Type: CAZyme
Location: 6099722 - 6101560 (+)
Gene ID: Rep_457_c_0_4559
Type: CAZyme
Location: 6101593 - 6102765 (+)
Gene ID: Rep_457_c_0_4560
Type: TF
Location: 6103287 - 6103694 (-)
Gene ID: Rep_457_c_0_4561
Type: TF
Location: 6103834 - 6107784 (+)
Gene ID: Rep_457_c_0_4562
Type: CAZyme
Location: 6107980 - 6109398 (-)
Gene ID: Rep_457_c_0_4563
Type: CAZyme
Location: 6109664 - 6111664 (+)
Gene ID: Rep_457_c_0_4564
Type: CAZyme
Location: 6111678 - 6113462 (+)
Gene ID: Rep_457_c_0_4565
Type: CAZyme
Location: 6113467 - 6115680 (+)
Gene ID: Rep_457_c_0_4566
Type: CAZyme
Location: 6115681 - 6117837 (+)
Gene ID: Rep_457_c_0_4567
Type:
Location: 6117919 - 6118020 (+)
Gene ID: Rep_457_c_0_4568
Type: STP
Location: 6117978 - 6119969 (-)
Gene ID: Rep_457_c_0_4569
Type: CAZyme
Location: 6120253 - 6122478 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_4553 vegetarian > omnivore 3.03976 0.00110
Rep_457_c_0_4553 vegan > omnivore 2.05318 0.01606
Rep_457_c_0_4555 vegan > omnivore 1.65974 0.01606
Rep_457_c_0_4555 vegetarian > omnivore 1.92828 0.00110
Rep_457_c_0_4558 vegan > omnivore 3.37710 0.01606
Rep_457_c_0_4558 vegetarian > omnivore 4.01737 0.00110
Rep_457_c_0_4559 vegan > omnivore 1.17922 0.01606
Rep_457_c_0_4559 vegetarian > omnivore 2.12558 0.00110
Rep_457_c_0_4560 vegetarian > omnivore 2.38599 0.00110
Rep_457_c_0_4560 vegan > omnivore 1.76690 0.01606
Rep_457_c_0_4563 vegetarian > omnivore 2.55486 0.00110
Rep_457_c_0_4563 vegan > omnivore 2.23007 0.01606
Rep_457_c_0_4564 vegetarian > omnivore 3.45803 0.00110
Rep_457_c_0_4564 vegan > omnivore 2.50510 0.01606
Rep_457_c_0_4565 vegetarian > omnivore 2.31400 0.00110
Rep_457_c_0_4565 vegan > omnivore 1.97438 0.01606
Rep_457_c_0_4566 vegetarian > omnivore 1.98878 0.00110
Rep_457_c_0_4566 vegan > omnivore 1.81021 0.01606

🧭 Explore Read Mapping of CGC

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