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Cluster: Rep_457_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_457_c_0 Rep_457_c_0_26 31160 34375 - GH2
peptidase Rep_457_c_0 Rep_457_c_0_27 34387 35259 - S09.UPW
TC Rep_457_c_0 Rep_457_c_0_28 35270 37261 - 2.A.67.4.2
pfam Rep_457_c_0 Rep_457_c_0_29 37397 37771 - DUF1573 | HYDIN_VesB_CFA65-like_Ig
pfam Rep_457_c_0 Rep_457_c_0_30 37885 38595 - TP_methylase
TC Rep_457_c_0 Rep_457_c_0_31 39674 40390 + 2.A.78.1.1
TC Rep_457_c_0 Rep_457_c_0_32 40387 40704 + 2.A.78.1.1
Gene ID: Rep_457_c_0_26
Type: CAZyme
Location: 31160 - 34375 (-)
Gene ID: Rep_457_c_0_27
Type: peptidase
Location: 34387 - 35259 (-)
Gene ID: Rep_457_c_0_28
Type: TC
Location: 35270 - 37261 (-)
Gene ID: Rep_457_c_0_29
Type: pfam
Location: 37397 - 37771 (-)
Gene ID: Rep_457_c_0_30
Type: pfam
Location: 37885 - 38595 (-)
Gene ID: Rep_457_c_0_31
Type: TC
Location: 39674 - 40390 (+)
Gene ID: Rep_457_c_0_32
Type: TC
Location: 40387 - 40704 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_457_c_0_27 vegetarian > omnivore 1.03167 0.00110
Rep_457_c_0_31 vegan > omnivore 3.37396 0.01606
Rep_457_c_0_31 vegetarian > omnivore 3.87427 0.00110
Rep_457_c_0_32 vegan > omnivore 3.05826 0.01606
Rep_457_c_0_32 vegetarian > omnivore 3.96282 0.00110

🧭 Explore Read Mapping of CGC

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