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Cluster: Rep_453_CGC89

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_453_c_394 Rep_453_c_394_1 83 2545 - GH31_4
TC Rep_453_c_394 Rep_453_c_394_2 2848 4485 - 8.A.46.1.1
TC Rep_453_c_394 Rep_453_c_394_3 4507 7455 - 1.B.14.6.1
TF Rep_453_c_394 Rep_453_c_394_4 7670 10615 - HTH_AraC | HTH_AraC
CAZyme Rep_453_c_394 Rep_453_c_394_5 10739 13090 - GH35
CAZyme Rep_453_c_394 Rep_453_c_394_6 13120 15648 - GH51_2
CAZyme Rep_453_c_394 Rep_453_c_394_7 15696 17639 - GH43_19 | GH43_34
CAZyme Rep_453_c_394 Rep_453_c_394_8 17795 19300 - GH30_2
pfam Rep_453_c_394 Rep_453_c_394_9 19347 21092 - SusD_RagB | SusD-like_3
TC Rep_453_c_394 Rep_453_c_394_10 21105 24383 - 1.B.14.6.1
Gene ID: Rep_453_c_394_1
Type: CAZyme
Location: 83 - 2545 (-)
Gene ID: Rep_453_c_394_2
Type: TC
Location: 2848 - 4485 (-)
Gene ID: Rep_453_c_394_3
Type: TC
Location: 4507 - 7455 (-)
Gene ID: Rep_453_c_394_4
Type: TF
Location: 7670 - 10615 (-)
Gene ID: Rep_453_c_394_5
Type: CAZyme
Location: 10739 - 13090 (-)
Gene ID: Rep_453_c_394_6
Type: CAZyme
Location: 13120 - 15648 (-)
Gene ID: Rep_453_c_394_7
Type: CAZyme
Location: 15696 - 17639 (-)
Gene ID: Rep_453_c_394_8
Type: CAZyme
Location: 17795 - 19300 (-)
Gene ID: Rep_453_c_394_9
Type: pfam
Location: 19347 - 21092 (-)
Gene ID: Rep_453_c_394_10
Type: TC
Location: 21105 - 24383 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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