Cluster: Rep_453_CGC86
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: Rep_453
- CGC Family ID: CGCFAM_00111
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_453_c_380 | Rep_453_c_380_13 | 17101 | 18798 | - | 8.A.46.1.6 |
| TC | Rep_453_c_380 | Rep_453_c_380_14 | 18818 | 22087 | - | 1.B.14.6.1 |
| STP | Rep_453_c_380 | Rep_453_c_380_15 | 22116 | 23102 | - | FecR |
| TF | Rep_453_c_380 | Rep_453_c_380_16 | 23167 | 23769 | - | GerE |
| CAZyme | Rep_453_c_380 | Rep_453_c_380_17 | 23772 | 25154 | - | GH175 |
Gene ID: Rep_453_c_380_13
Type: TC
Location: 17101 - 18798 (-)
Type: TC
Location: 17101 - 18798 (-)
Gene ID: Rep_453_c_380_14
Type: TC
Location: 18818 - 22087 (-)
Type: TC
Location: 18818 - 22087 (-)
Gene ID: Rep_453_c_380_15
Type: STP
Location: 22116 - 23102 (-)
Type: STP
Location: 22116 - 23102 (-)
Gene ID: Rep_453_c_380_16
Type: TF
Location: 23167 - 23769 (-)
Type: TF
Location: 23167 - 23769 (-)
Gene ID: Rep_453_c_380_17
Type: CAZyme
Location: 23772 - 25154 (-)
Type: CAZyme
Location: 23772 - 25154 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_453_c_380_15 | vegan > omnivore | 1.06807 | 0.04329 |
| Rep_453_c_380_15 | vegetarian > omnivore | 1.27763 | 0.03459 |
| Rep_453_c_380_16 | vegetarian > omnivore | 1.45780 | 0.03459 |
| Rep_453_c_380_17 | vegetarian > omnivore | 1.24054 | 0.03459 |