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Cluster: Rep_453_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_453_c_31 Rep_453_c_31_2 1951 3801 + GH13_46
CAZyme Rep_453_c_31 Rep_453_c_31_3 4011 6227 + GH97
TC Rep_453_c_31 Rep_453_c_31_4 6342 9314 + 1.B.14.6.1
TC Rep_453_c_31 Rep_453_c_31_5 9327 10934 + 8.A.46.1.1
pfam Rep_453_c_31 Rep_453_c_31_6 10951 12054 + SusE
NULL(UNKNOWN) Rep_453_c_31 Rep_453_c_31_7 12275 12451 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_453_c_31 Rep_453_c_31_8 12552 15548 + 1.B.14.6.1
pfam Rep_453_c_31 Rep_453_c_31_9 15561 17183 + SusD_RagB | SusD-like_3
pfam Rep_453_c_31 Rep_453_c_31_10 17219 18379 + SusE | SusF_SusE
CAZyme Rep_453_c_31 Rep_453_c_31_11 18620 20926 + GH13_10
Gene ID: Rep_453_c_31_2
Type: CAZyme
Location: 1951 - 3801 (+)
Gene ID: Rep_453_c_31_3
Type: CAZyme
Location: 4011 - 6227 (+)
Gene ID: Rep_453_c_31_4
Type: TC
Location: 6342 - 9314 (+)
Gene ID: Rep_453_c_31_5
Type: TC
Location: 9327 - 10934 (+)
Gene ID: Rep_453_c_31_6
Type: pfam
Location: 10951 - 12054 (+)
Gene ID: Rep_453_c_31_7
Type:
Location: 12275 - 12451 (-)
Gene ID: Rep_453_c_31_8
Type: TC
Location: 12552 - 15548 (+)
Gene ID: Rep_453_c_31_9
Type: pfam
Location: 15561 - 17183 (+)
Gene ID: Rep_453_c_31_10
Type: pfam
Location: 17219 - 18379 (+)
Gene ID: Rep_453_c_31_11
Type: CAZyme
Location: 18620 - 20926 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_453_c_31_4 vegetarian > omnivore 2.04406 0.03459

🧭 Explore Read Mapping of CGC

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