Cluster: Rep_453_CGC68
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_453
- CGC Family ID: CGCFAM_00478
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_453_c_316 | Rep_453_c_316_13 | 19757 | 22576 | + | PL40 |
| CAZyme | Rep_453_c_316 | Rep_453_c_316_14 | 22644 | 25388 | + | PL40 |
| CAZyme | Rep_453_c_316 | Rep_453_c_316_15 | 25604 | 29380 | + | GH106 |
| TF | Rep_453_c_316 | Rep_453_c_316_16 | 29503 | 32394 | + | HTH_AraC |
| STP | Rep_453_c_316 | Rep_453_c_316_17 | 32537 | 33109 | + | Sigma70_r2 | Sigma70_r4_2 |
| TC | Rep_453_c_316 | Rep_453_c_316_18 | 33152 | 36418 | + | 1.B.14.6.1 |
Gene ID: Rep_453_c_316_13
Type: CAZyme
Location: 19757 - 22576 (+)
Type: CAZyme
Location: 19757 - 22576 (+)
Gene ID: Rep_453_c_316_14
Type: CAZyme
Location: 22644 - 25388 (+)
Type: CAZyme
Location: 22644 - 25388 (+)
Gene ID: Rep_453_c_316_15
Type: CAZyme
Location: 25604 - 29380 (+)
Type: CAZyme
Location: 25604 - 29380 (+)
Gene ID: Rep_453_c_316_16
Type: TF
Location: 29503 - 32394 (+)
Type: TF
Location: 29503 - 32394 (+)
Gene ID: Rep_453_c_316_17
Type: STP
Location: 32537 - 33109 (+)
Type: STP
Location: 32537 - 33109 (+)
Gene ID: Rep_453_c_316_18
Type: TC
Location: 33152 - 36418 (+)
Type: TC
Location: 33152 - 36418 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.