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Cluster: Rep_453_CGC67

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_453_c_316 Rep_453_c_316_2 3504 4727 + GH88
STP Rep_453_c_316 Rep_453_c_316_3 4752 5297 + Sigma70_r2 | Sigma70_r4_2
TC Rep_453_c_316 Rep_453_c_316_4 5435 8512 + 1.B.14.6.1
TC Rep_453_c_316 Rep_453_c_316_5 8523 10349 + 8.A.46.1.6
CAZyme Rep_453_c_316 Rep_453_c_316_6 10515 12449 + GH97
CAZyme Rep_453_c_316 Rep_453_c_316_7 12446 15841 + GH92
CAZyme Rep_453_c_316 Rep_453_c_316_8 16044 18416 - GH3
Gene ID: Rep_453_c_316_2
Type: CAZyme
Location: 3504 - 4727 (+)
Gene ID: Rep_453_c_316_3
Type: STP
Location: 4752 - 5297 (+)
Gene ID: Rep_453_c_316_4
Type: TC
Location: 5435 - 8512 (+)
Gene ID: Rep_453_c_316_5
Type: TC
Location: 8523 - 10349 (+)
Gene ID: Rep_453_c_316_6
Type: CAZyme
Location: 10515 - 12449 (+)
Gene ID: Rep_453_c_316_7
Type: CAZyme
Location: 12446 - 15841 (+)
Gene ID: Rep_453_c_316_8
Type: CAZyme
Location: 16044 - 18416 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_453_c_316_2 vegan > omnivore 1.40326 0.01002
Rep_453_c_316_4 vegan > omnivore 1.14507 0.04329
Rep_453_c_316_5 vegan > omnivore 1.48513 0.03898

🧭 Explore Read Mapping of CGC

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