Cluster: Rep_453_CGC62
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: pectin
- Genome ID: Rep_453
- CGC Family ID: CGCFAM_00108
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_453_c_288 | Rep_453_c_288_2 | 2624 | 5857 | - | 1.B.14.6.1 |
| CAZyme | Rep_453_c_288 | Rep_453_c_288_3 | 6640 | 7608 | - | GH43_29 |
| CAZyme | Rep_453_c_288 | Rep_453_c_288_4 | 7612 | 9591 | - | GH51_2 |
| CAZyme | Rep_453_c_288 | Rep_453_c_288_5 | 9614 | 11149 | - | GH43_4 |
| TF | Rep_453_c_288 | Rep_453_c_288_6 | 11434 | 15666 | + | HTH_AraC |
| NULL(UNKNOWN) | Rep_453_c_288 | Rep_453_c_288_7 | 15860 | 16021 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_453_c_288 | Rep_453_c_288_8 | 16071 | 19280 | + | 1.B.14.6.1 |
| pfam | Rep_453_c_288 | Rep_453_c_288_9 | 19301 | 21052 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_453_c_288 | Rep_453_c_288_10 | 21080 | 22861 | + | Big_3 |
| CAZyme | Rep_453_c_288 | Rep_453_c_288_11 | 22953 | 24836 | + | GH43_4 |
| CAZyme | Rep_453_c_288 | Rep_453_c_288_12 | 24965 | 26911 | + | GH97 |
Gene ID: Rep_453_c_288_2
Type: TC
Location: 2624 - 5857 (-)
Type: TC
Location: 2624 - 5857 (-)
Gene ID: Rep_453_c_288_3
Type: CAZyme
Location: 6640 - 7608 (-)
Type: CAZyme
Location: 6640 - 7608 (-)
Gene ID: Rep_453_c_288_4
Type: CAZyme
Location: 7612 - 9591 (-)
Type: CAZyme
Location: 7612 - 9591 (-)
Gene ID: Rep_453_c_288_5
Type: CAZyme
Location: 9614 - 11149 (-)
Type: CAZyme
Location: 9614 - 11149 (-)
Gene ID: Rep_453_c_288_6
Type: TF
Location: 11434 - 15666 (+)
Type: TF
Location: 11434 - 15666 (+)
Gene ID: Rep_453_c_288_7
Type:
Location: 15860 - 16021 (+)
Type:
Location: 15860 - 16021 (+)
Gene ID: Rep_453_c_288_8
Type: TC
Location: 16071 - 19280 (+)
Type: TC
Location: 16071 - 19280 (+)
Gene ID: Rep_453_c_288_9
Type: pfam
Location: 19301 - 21052 (+)
Type: pfam
Location: 19301 - 21052 (+)
Gene ID: Rep_453_c_288_10
Type: pfam
Location: 21080 - 22861 (+)
Type: pfam
Location: 21080 - 22861 (+)
Gene ID: Rep_453_c_288_11
Type: CAZyme
Location: 22953 - 24836 (+)
Type: CAZyme
Location: 22953 - 24836 (+)
Gene ID: Rep_453_c_288_12
Type: CAZyme
Location: 24965 - 26911 (+)
Type: CAZyme
Location: 24965 - 26911 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.