Cluster: Rep_453_CGC59
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_453
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_453_c_278 | Rep_453_c_278_9 | 11416 | 14862 | + | 1.B.14.6.1 |
| pfam | Rep_453_c_278 | Rep_453_c_278_10 | 14873 | 16408 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_453_c_278 | Rep_453_c_278_11 | 16701 | 19982 | + | GH106 |
| TF | Rep_453_c_278 | Rep_453_c_278_12 | 20078 | 24046 | - | HTH_AraC |
| TC | Rep_453_c_278 | Rep_453_c_278_13 | 24361 | 27609 | + | 1.B.14.6.1 |
| pfam | Rep_453_c_278 | Rep_453_c_278_14 | 27622 | 29559 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_453_c_278 | Rep_453_c_278_15 | 29602 | 32142 | + | CBM57 | GH2 |
Gene ID: Rep_453_c_278_9
Type: TC
Location: 11416 - 14862 (+)
Type: TC
Location: 11416 - 14862 (+)
Gene ID: Rep_453_c_278_10
Type: pfam
Location: 14873 - 16408 (+)
Type: pfam
Location: 14873 - 16408 (+)
Gene ID: Rep_453_c_278_11
Type: CAZyme
Location: 16701 - 19982 (+)
Type: CAZyme
Location: 16701 - 19982 (+)
Gene ID: Rep_453_c_278_12
Type: TF
Location: 20078 - 24046 (-)
Type: TF
Location: 20078 - 24046 (-)
Gene ID: Rep_453_c_278_13
Type: TC
Location: 24361 - 27609 (+)
Type: TC
Location: 24361 - 27609 (+)
Gene ID: Rep_453_c_278_14
Type: pfam
Location: 27622 - 29559 (+)
Type: pfam
Location: 27622 - 29559 (+)
Gene ID: Rep_453_c_278_15
Type: CAZyme
Location: 29602 - 32142 (+)
Type: CAZyme
Location: 29602 - 32142 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.