Cluster: Rep_453_CGC56
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_453
- CGC Family ID: CGCFAM_00048
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_453_c_269 | Rep_453_c_269_10 | 12829 | 13797 | + | 1.A.34.1.3 |
| TF | Rep_453_c_269 | Rep_453_c_269_11 | 13840 | 14187 | + | MerR |
| STP | Rep_453_c_269 | Rep_453_c_269_12 | 14319 | 16589 | - | HD |
| CAZyme | Rep_453_c_269 | Rep_453_c_269_13 | 16692 | 18020 | - | GH23 |
| pfam | Rep_453_c_269 | Rep_453_c_269_14 | 17962 | 18735 | - | DUF5683 |
| pfam | Rep_453_c_269 | Rep_453_c_269_15 | 18753 | 19649 | - | ParBc | HTH_ParB | ParB_dimer |
| TC | Rep_453_c_269 | Rep_453_c_269_16 | 19653 | 20420 | - | 8.A.3.2.3 |
| pfam | Rep_453_c_269 | Rep_453_c_269_17 | 20680 | 21453 | + | SurE |
| CAZyme | Rep_453_c_269 | Rep_453_c_269_18 | 21450 | 22589 | + | GT19 |
| pfam | Rep_453_c_269 | Rep_453_c_269_19 | 22650 | 23387 | + | NigD_N | NigD_C |
| pfam | Rep_453_c_269 | Rep_453_c_269_20 | 23418 | 24257 | - | CTP_transf_1 |
| TC | Rep_453_c_269 | Rep_453_c_269_21 | 24451 | 26433 | - | 3.A.16.1.1 |
Gene ID: Rep_453_c_269_10
Type: TC
Location: 12829 - 13797 (+)
Type: TC
Location: 12829 - 13797 (+)
Gene ID: Rep_453_c_269_11
Type: TF
Location: 13840 - 14187 (+)
Type: TF
Location: 13840 - 14187 (+)
Gene ID: Rep_453_c_269_12
Type: STP
Location: 14319 - 16589 (-)
Type: STP
Location: 14319 - 16589 (-)
Gene ID: Rep_453_c_269_13
Type: CAZyme
Location: 16692 - 18020 (-)
Type: CAZyme
Location: 16692 - 18020 (-)
Gene ID: Rep_453_c_269_14
Type: pfam
Location: 17962 - 18735 (-)
Type: pfam
Location: 17962 - 18735 (-)
Gene ID: Rep_453_c_269_15
Type: pfam
Location: 18753 - 19649 (-)
Type: pfam
Location: 18753 - 19649 (-)
Gene ID: Rep_453_c_269_16
Type: TC
Location: 19653 - 20420 (-)
Type: TC
Location: 19653 - 20420 (-)
Gene ID: Rep_453_c_269_17
Type: pfam
Location: 20680 - 21453 (+)
Type: pfam
Location: 20680 - 21453 (+)
Gene ID: Rep_453_c_269_18
Type: CAZyme
Location: 21450 - 22589 (+)
Type: CAZyme
Location: 21450 - 22589 (+)
Gene ID: Rep_453_c_269_19
Type: pfam
Location: 22650 - 23387 (+)
Type: pfam
Location: 22650 - 23387 (+)
Gene ID: Rep_453_c_269_20
Type: pfam
Location: 23418 - 24257 (-)
Type: pfam
Location: 23418 - 24257 (-)
Gene ID: Rep_453_c_269_21
Type: TC
Location: 24451 - 26433 (-)
Type: TC
Location: 24451 - 26433 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_453_c_269_14 | vegan > omnivore | 1.32936 | 0.02719 |
| Rep_453_c_269_14 | vegetarian > omnivore | 1.27424 | 0.03459 |