Cluster: Rep_453_CGC55
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_453
- CGC Family ID: CGCFAM_03627
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_453_c_263 | Rep_453_c_263_34 | 35412 | 35762 | + | 3.D.1.8.1 |
| TC | Rep_453_c_263 | Rep_453_c_263_35 | 35753 | 36349 | + | 3.D.1.6.1 |
| TC | Rep_453_c_263 | Rep_453_c_263_36 | 36346 | 37905 | + | 3.D.1.5.1 |
| TC | Rep_453_c_263 | Rep_453_c_263_37 | 38032 | 39108 | + | 3.D.1.5.1 |
| TC | Rep_453_c_263 | Rep_453_c_263_38 | 39108 | 39569 | + | 3.D.1.1.1 |
| TC | Rep_453_c_263 | Rep_453_c_263_39 | 39566 | 40069 | + | 3.D.9.1.1 |
| TC | Rep_453_c_263 | Rep_453_c_263_40 | 40076 | 40384 | + | 3.D.1.2.1 |
| TC | Rep_453_c_263 | Rep_453_c_263_41 | 40387 | 42309 | + | 3.D.1.2.1 |
| TC | Rep_453_c_263 | Rep_453_c_263_42 | 42367 | 43848 | + | 3.D.1.2.1 |
| TC | Rep_453_c_263 | Rep_453_c_263_43 | 43870 | 45288 | + | 3.D.1.8.1 |
| pfam | Rep_453_c_263 | Rep_453_c_263_44 | 45470 | 46984 | + | TROVE | TROVE |
| TC | Rep_453_c_263 | Rep_453_c_263_45 | 47287 | 49293 | - | 2.A.21.9.2 |
| NULL(UNKNOWN) | Rep_453_c_263 | Rep_453_c_263_46 | 49483 | 50010 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_453_c_263 | Rep_453_c_263_47 | 50059 | 50889 | + | GH28 |
| pfam | Rep_453_c_263 | Rep_453_c_263_48 | 50955 | 51182 | - | CobW_C |
| TC | Rep_453_c_263 | Rep_453_c_263_49 | 51192 | 51890 | + | 9.B.10.1.1 |
Gene ID: Rep_453_c_263_34
Type: TC
Location: 35412 - 35762 (+)
Type: TC
Location: 35412 - 35762 (+)
Gene ID: Rep_453_c_263_35
Type: TC
Location: 35753 - 36349 (+)
Type: TC
Location: 35753 - 36349 (+)
Gene ID: Rep_453_c_263_36
Type: TC
Location: 36346 - 37905 (+)
Type: TC
Location: 36346 - 37905 (+)
Gene ID: Rep_453_c_263_37
Type: TC
Location: 38032 - 39108 (+)
Type: TC
Location: 38032 - 39108 (+)
Gene ID: Rep_453_c_263_38
Type: TC
Location: 39108 - 39569 (+)
Type: TC
Location: 39108 - 39569 (+)
Gene ID: Rep_453_c_263_39
Type: TC
Location: 39566 - 40069 (+)
Type: TC
Location: 39566 - 40069 (+)
Gene ID: Rep_453_c_263_40
Type: TC
Location: 40076 - 40384 (+)
Type: TC
Location: 40076 - 40384 (+)
Gene ID: Rep_453_c_263_41
Type: TC
Location: 40387 - 42309 (+)
Type: TC
Location: 40387 - 42309 (+)
Gene ID: Rep_453_c_263_42
Type: TC
Location: 42367 - 43848 (+)
Type: TC
Location: 42367 - 43848 (+)
Gene ID: Rep_453_c_263_43
Type: TC
Location: 43870 - 45288 (+)
Type: TC
Location: 43870 - 45288 (+)
Gene ID: Rep_453_c_263_44
Type: pfam
Location: 45470 - 46984 (+)
Type: pfam
Location: 45470 - 46984 (+)
Gene ID: Rep_453_c_263_45
Type: TC
Location: 47287 - 49293 (-)
Type: TC
Location: 47287 - 49293 (-)
Gene ID: Rep_453_c_263_46
Type:
Location: 49483 - 50010 (+)
Type:
Location: 49483 - 50010 (+)
Gene ID: Rep_453_c_263_47
Type: CAZyme
Location: 50059 - 50889 (+)
Type: CAZyme
Location: 50059 - 50889 (+)
Gene ID: Rep_453_c_263_48
Type: pfam
Location: 50955 - 51182 (-)
Type: pfam
Location: 50955 - 51182 (-)
Gene ID: Rep_453_c_263_49
Type: TC
Location: 51192 - 51890 (+)
Type: TC
Location: 51192 - 51890 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.