Cluster: Rep_453_CGC49
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_453
- CGC Family ID: CGCFAM_04737
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_453_c_237 | Rep_453_c_237_6 | 3218 | 4156 | + | GT2 |
| pfam | Rep_453_c_237 | Rep_453_c_237_7 | 4187 | 5854 | + | DUF6056 |
| pfam | Rep_453_c_237 | Rep_453_c_237_8 | 5971 | 6930 | + | Acyl_transf_3 |
| CAZyme | Rep_453_c_237 | Rep_453_c_237_9 | 6981 | 8144 | + | GT4 |
| TC | Rep_453_c_237 | Rep_453_c_237_10 | 8123 | 8998 | + | 3.A.1.103.5 |
| TC | Rep_453_c_237 | Rep_453_c_237_11 | 9008 | 10279 | + | 3.A.1.103.5 |
| CAZyme | Rep_453_c_237 | Rep_453_c_237_12 | 10300 | 11211 | + | GT23 |
| CAZyme | Rep_453_c_237 | Rep_453_c_237_13 | 11234 | 12046 | + | GT2 |
| CAZyme | Rep_453_c_237 | Rep_453_c_237_14 | 12167 | 13120 | - | GT2 |
| CAZyme | Rep_453_c_237 | Rep_453_c_237_15 | 13125 | 13949 | - | GT111 |
| pfam | Rep_453_c_237 | Rep_453_c_237_16 | 13925 | 14548 | - | Hexapep | Hexapep_2 | Hexapep_2 |
| CAZyme | Rep_453_c_237 | Rep_453_c_237_17 | 14552 | 15712 | - | GT2 |
| CAZyme | Rep_453_c_237 | Rep_453_c_237_18 | 15717 | 16844 | - | GT2 |
| CAZyme | Rep_453_c_237 | Rep_453_c_237_19 | 16847 | 17746 | - | GT2 |
Gene ID: Rep_453_c_237_6
Type: CAZyme
Location: 3218 - 4156 (+)
Type: CAZyme
Location: 3218 - 4156 (+)
Gene ID: Rep_453_c_237_7
Type: pfam
Location: 4187 - 5854 (+)
Type: pfam
Location: 4187 - 5854 (+)
Gene ID: Rep_453_c_237_8
Type: pfam
Location: 5971 - 6930 (+)
Type: pfam
Location: 5971 - 6930 (+)
Gene ID: Rep_453_c_237_9
Type: CAZyme
Location: 6981 - 8144 (+)
Type: CAZyme
Location: 6981 - 8144 (+)
Gene ID: Rep_453_c_237_10
Type: TC
Location: 8123 - 8998 (+)
Type: TC
Location: 8123 - 8998 (+)
Gene ID: Rep_453_c_237_11
Type: TC
Location: 9008 - 10279 (+)
Type: TC
Location: 9008 - 10279 (+)
Gene ID: Rep_453_c_237_12
Type: CAZyme
Location: 10300 - 11211 (+)
Type: CAZyme
Location: 10300 - 11211 (+)
Gene ID: Rep_453_c_237_13
Type: CAZyme
Location: 11234 - 12046 (+)
Type: CAZyme
Location: 11234 - 12046 (+)
Gene ID: Rep_453_c_237_14
Type: CAZyme
Location: 12167 - 13120 (-)
Type: CAZyme
Location: 12167 - 13120 (-)
Gene ID: Rep_453_c_237_15
Type: CAZyme
Location: 13125 - 13949 (-)
Type: CAZyme
Location: 13125 - 13949 (-)
Gene ID: Rep_453_c_237_16
Type: pfam
Location: 13925 - 14548 (-)
Type: pfam
Location: 13925 - 14548 (-)
Gene ID: Rep_453_c_237_17
Type: CAZyme
Location: 14552 - 15712 (-)
Type: CAZyme
Location: 14552 - 15712 (-)
Gene ID: Rep_453_c_237_18
Type: CAZyme
Location: 15717 - 16844 (-)
Type: CAZyme
Location: 15717 - 16844 (-)
Gene ID: Rep_453_c_237_19
Type: CAZyme
Location: 16847 - 17746 (-)
Type: CAZyme
Location: 16847 - 17746 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.