dbCAN Logo

Cluster: Rep_453_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_453_c_233 Rep_453_c_233_3 2253 3329 + 2.A.6.2.28
TC Rep_453_c_233 Rep_453_c_233_4 3349 6384 + 2.A.6.2.33
pfam Rep_453_c_233 Rep_453_c_233_5 6381 7700 + OEP | OEP
TC Rep_453_c_233 Rep_453_c_233_6 7787 9445 + 2.A.3.3.22
TF Rep_453_c_233 Rep_453_c_233_7 9629 12538 - HTH_AraC
TC Rep_453_c_233 Rep_453_c_233_8 12988 16182 + 1.B.14.6.1
pfam Rep_453_c_233 Rep_453_c_233_9 16199 17908 + SusD_RagB | SusD-like_3
pfam Rep_453_c_233 Rep_453_c_233_10 17908 18393 + DUF5018-rel
CAZyme Rep_453_c_233 Rep_453_c_233_11 18498 20333 + GH163
CAZyme Rep_453_c_233 Rep_453_c_233_12 20356 22902 + GH95
CAZyme Rep_453_c_233 Rep_453_c_233_13 23162 25318 - GH89
Gene ID: Rep_453_c_233_3
Type: TC
Location: 2253 - 3329 (+)
Gene ID: Rep_453_c_233_4
Type: TC
Location: 3349 - 6384 (+)
Gene ID: Rep_453_c_233_5
Type: pfam
Location: 6381 - 7700 (+)
Gene ID: Rep_453_c_233_6
Type: TC
Location: 7787 - 9445 (+)
Gene ID: Rep_453_c_233_7
Type: TF
Location: 9629 - 12538 (-)
Gene ID: Rep_453_c_233_8
Type: TC
Location: 12988 - 16182 (+)
Gene ID: Rep_453_c_233_9
Type: pfam
Location: 16199 - 17908 (+)
Gene ID: Rep_453_c_233_10
Type: pfam
Location: 17908 - 18393 (+)
Gene ID: Rep_453_c_233_11
Type: CAZyme
Location: 18498 - 20333 (+)
Gene ID: Rep_453_c_233_12
Type: CAZyme
Location: 20356 - 22902 (+)
Gene ID: Rep_453_c_233_13
Type: CAZyme
Location: 23162 - 25318 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List