Cluster: Rep_453_CGC41
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_453
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_453_c_209 | Rep_453_c_209_19 | 23447 | 24910 | - | CBM50 |
| pfam | Rep_453_c_209 | Rep_453_c_209_20 | 24930 | 25202 | - | Bac_DNA_binding |
| pfam | Rep_453_c_209 | Rep_453_c_209_21 | 25278 | 26576 | - | UPF0004 | Radical_SAM | TRAM_2 |
| TC | Rep_453_c_209 | Rep_453_c_209_22 | 26580 | 27539 | - | 3.A.5.1.1 |
Gene ID: Rep_453_c_209_19
Type: CAZyme
Location: 23447 - 24910 (-)
Type: CAZyme
Location: 23447 - 24910 (-)
Gene ID: Rep_453_c_209_20
Type: pfam
Location: 24930 - 25202 (-)
Type: pfam
Location: 24930 - 25202 (-)
Gene ID: Rep_453_c_209_21
Type: pfam
Location: 25278 - 26576 (-)
Type: pfam
Location: 25278 - 26576 (-)
Gene ID: Rep_453_c_209_22
Type: TC
Location: 26580 - 27539 (-)
Type: TC
Location: 26580 - 27539 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_453_c_209_20 | vegetarian > omnivore | 1.83196 | 0.02009 |