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Cluster: Rep_453_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_453_c_15 Rep_453_c_15_8 3877 7101 + 1.B.14.6.1
TC Rep_453_c_15 Rep_453_c_15_9 7120 8622 + 8.A.46.1.4
CAZyme Rep_453_c_15 Rep_453_c_15_10 8754 10394 + CBM93 | GH33
CAZyme Rep_453_c_15 Rep_453_c_15_11 10395 12404 + GH20
sulfatase Rep_453_c_15 Rep_453_c_15_12 12405 13070 + S1_16
CAZyme Rep_453_c_15 Rep_453_c_15_13 13067 15133 + CE20
CAZyme Rep_453_c_15 Rep_453_c_15_14 15200 17764 + GH2
CAZyme Rep_453_c_15 Rep_453_c_15_15 17781 20105 + GH20
pfam Rep_453_c_15 Rep_453_c_15_16 20332 21414 + Kelch_1 | Kelch_2 | Kelch_HCF | Kelch_KLHDC2_KLHL20_DRC7 | NANM | NANM
CAZyme Rep_453_c_15 Rep_453_c_15_17 21411 23471 + GH20
Gene ID: Rep_453_c_15_8
Type: TC
Location: 3877 - 7101 (+)
Gene ID: Rep_453_c_15_9
Type: TC
Location: 7120 - 8622 (+)
Gene ID: Rep_453_c_15_10
Type: CAZyme
Location: 8754 - 10394 (+)
Gene ID: Rep_453_c_15_11
Type: CAZyme
Location: 10395 - 12404 (+)
Gene ID: Rep_453_c_15_12
Type: sulfatase
Location: 12405 - 13070 (+)
Gene ID: Rep_453_c_15_13
Type: CAZyme
Location: 13067 - 15133 (+)
Gene ID: Rep_453_c_15_14
Type: CAZyme
Location: 15200 - 17764 (+)
Gene ID: Rep_453_c_15_15
Type: CAZyme
Location: 17781 - 20105 (+)
Gene ID: Rep_453_c_15_16
Type: pfam
Location: 20332 - 21414 (+)
Gene ID: Rep_453_c_15_17
Type: CAZyme
Location: 21411 - 23471 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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