Cluster: Rep_453_CGC34
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_453
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_453_c_183 | Rep_453_c_183_6 | 5397 | 6938 | - | CBM91 | GH43_10 |
| CAZyme | Rep_453_c_183 | Rep_453_c_183_7 | 7033 | 9189 | - | GH36 |
| CAZyme | Rep_453_c_183 | Rep_453_c_183_8 | 9310 | 11265 | - | CE20 | CE20 |
| pfam | Rep_453_c_183 | Rep_453_c_183_9 | 11280 | 13226 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_453_c_183 | Rep_453_c_183_10 | 13257 | 16394 | - | 1.B.14.6.1 |
| CAZyme | Rep_453_c_183 | Rep_453_c_183_11 | 16478 | 18754 | - | GH3 |
| CAZyme | Rep_453_c_183 | Rep_453_c_183_12 | 18764 | 21709 | - | CBM32 | GH2 |
| sulfatase | Rep_453_c_183 | Rep_453_c_183_13 | 21721 | 22740 | - | S1_4 |
| pfam | Rep_453_c_183 | Rep_453_c_183_14 | 22823 | 24457 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_453_c_183 | Rep_453_c_183_15 | 24504 | 27554 | - | 1.B.14.6.1 |
| CAZyme | Rep_453_c_183 | Rep_453_c_183_16 | 27595 | 29622 | - | GH36 |
| TF | Rep_453_c_183 | Rep_453_c_183_17 | 29829 | 33863 | - | HTH_AraC |
| CAZyme | Rep_453_c_183 | Rep_453_c_183_18 | 33947 | 35935 | - | GH97 |
| CAZyme | Rep_453_c_183 | Rep_453_c_183_19 | 35999 | 38398 | - | GH95 |
| CAZyme | Rep_453_c_183 | Rep_453_c_183_20 | 38427 | 40190 | - | GH110 |
Gene ID: Rep_453_c_183_6
Type: CAZyme
Location: 5397 - 6938 (-)
Type: CAZyme
Location: 5397 - 6938 (-)
Gene ID: Rep_453_c_183_7
Type: CAZyme
Location: 7033 - 9189 (-)
Type: CAZyme
Location: 7033 - 9189 (-)
Gene ID: Rep_453_c_183_8
Type: CAZyme
Location: 9310 - 11265 (-)
Type: CAZyme
Location: 9310 - 11265 (-)
Gene ID: Rep_453_c_183_9
Type: pfam
Location: 11280 - 13226 (-)
Type: pfam
Location: 11280 - 13226 (-)
Gene ID: Rep_453_c_183_10
Type: TC
Location: 13257 - 16394 (-)
Type: TC
Location: 13257 - 16394 (-)
Gene ID: Rep_453_c_183_11
Type: CAZyme
Location: 16478 - 18754 (-)
Type: CAZyme
Location: 16478 - 18754 (-)
Gene ID: Rep_453_c_183_12
Type: CAZyme
Location: 18764 - 21709 (-)
Type: CAZyme
Location: 18764 - 21709 (-)
Gene ID: Rep_453_c_183_13
Type: sulfatase
Location: 21721 - 22740 (-)
Type: sulfatase
Location: 21721 - 22740 (-)
Gene ID: Rep_453_c_183_14
Type: pfam
Location: 22823 - 24457 (-)
Type: pfam
Location: 22823 - 24457 (-)
Gene ID: Rep_453_c_183_15
Type: TC
Location: 24504 - 27554 (-)
Type: TC
Location: 24504 - 27554 (-)
Gene ID: Rep_453_c_183_16
Type: CAZyme
Location: 27595 - 29622 (-)
Type: CAZyme
Location: 27595 - 29622 (-)
Gene ID: Rep_453_c_183_17
Type: TF
Location: 29829 - 33863 (-)
Type: TF
Location: 29829 - 33863 (-)
Gene ID: Rep_453_c_183_18
Type: CAZyme
Location: 33947 - 35935 (-)
Type: CAZyme
Location: 33947 - 35935 (-)
Gene ID: Rep_453_c_183_19
Type: CAZyme
Location: 35999 - 38398 (-)
Type: CAZyme
Location: 35999 - 38398 (-)
Gene ID: Rep_453_c_183_20
Type: CAZyme
Location: 38427 - 40190 (-)
Type: CAZyme
Location: 38427 - 40190 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.