Cluster: Rep_453_CGC28
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_453
- CGC Family ID: CGCFAM_06455
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_453_c_155 | Rep_453_c_155_1 | 270 | 2723 | + | CBM91 | GH43_19 | GH43_9 |
| TC | Rep_453_c_155 | Rep_453_c_155_2 | 3249 | 6365 | + | 1.B.14.6.1 |
| pfam | Rep_453_c_155 | Rep_453_c_155_3 | 6379 | 8283 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_453_c_155 | Rep_453_c_155_4 | 8347 | 11313 | + | 1.B.14.6.1 |
| pfam | Rep_453_c_155 | Rep_453_c_155_5 | 11333 | 13018 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_453_c_155 | Rep_453_c_155_6 | 13053 | 13934 | + | CBM32 |
| CAZyme | Rep_453_c_155 | Rep_453_c_155_7 | 13958 | 14812 | + | GH16_3 |
| CAZyme | Rep_453_c_155 | Rep_453_c_155_8 | 15105 | 16250 | + | GH43_24 |
| TF | Rep_453_c_155 | Rep_453_c_155_9 | 16364 | 19228 | - | HTH_AraC | HTH_AraC |
| TC | Rep_453_c_155 | Rep_453_c_155_10 | 19529 | 22528 | + | 1.B.14.6.1 |
| TC | Rep_453_c_155 | Rep_453_c_155_11 | 22550 | 24166 | + | 8.A.46.1.3 |
| CAZyme | Rep_453_c_155 | Rep_453_c_155_12 | 24205 | 26208 | + | GH127 |
| pfam | Rep_453_c_155 | Rep_453_c_155_13 | 26513 | 28066 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_453_c_155 | Rep_453_c_155_14 | 28081 | 31152 | - | 1.B.14.6.1 |
Gene ID: Rep_453_c_155_1
Type: CAZyme
Location: 270 - 2723 (+)
Type: CAZyme
Location: 270 - 2723 (+)
Gene ID: Rep_453_c_155_2
Type: TC
Location: 3249 - 6365 (+)
Type: TC
Location: 3249 - 6365 (+)
Gene ID: Rep_453_c_155_3
Type: pfam
Location: 6379 - 8283 (+)
Type: pfam
Location: 6379 - 8283 (+)
Gene ID: Rep_453_c_155_4
Type: TC
Location: 8347 - 11313 (+)
Type: TC
Location: 8347 - 11313 (+)
Gene ID: Rep_453_c_155_5
Type: pfam
Location: 11333 - 13018 (+)
Type: pfam
Location: 11333 - 13018 (+)
Gene ID: Rep_453_c_155_6
Type: CAZyme
Location: 13053 - 13934 (+)
Type: CAZyme
Location: 13053 - 13934 (+)
Gene ID: Rep_453_c_155_7
Type: CAZyme
Location: 13958 - 14812 (+)
Type: CAZyme
Location: 13958 - 14812 (+)
Gene ID: Rep_453_c_155_8
Type: CAZyme
Location: 15105 - 16250 (+)
Type: CAZyme
Location: 15105 - 16250 (+)
Gene ID: Rep_453_c_155_9
Type: TF
Location: 16364 - 19228 (-)
Type: TF
Location: 16364 - 19228 (-)
Gene ID: Rep_453_c_155_10
Type: TC
Location: 19529 - 22528 (+)
Type: TC
Location: 19529 - 22528 (+)
Gene ID: Rep_453_c_155_11
Type: TC
Location: 22550 - 24166 (+)
Type: TC
Location: 22550 - 24166 (+)
Gene ID: Rep_453_c_155_12
Type: CAZyme
Location: 24205 - 26208 (+)
Type: CAZyme
Location: 24205 - 26208 (+)
Gene ID: Rep_453_c_155_13
Type: pfam
Location: 26513 - 28066 (-)
Type: pfam
Location: 26513 - 28066 (-)
Gene ID: Rep_453_c_155_14
Type: TC
Location: 28081 - 31152 (-)
Type: TC
Location: 28081 - 31152 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.